Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC17.38■□□□□ 0.37
Col7a1Q63870 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col7a1Q63870 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC17.37■□□□□ 0.37
Col7a1Q63870 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC17.37■□□□□ 0.37
Col7a1Q63870 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 H2afy-201ENSMUST00000016081 2046 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 Gm11421-201ENSMUST00000122124 294 ntBASIC17.37■□□□□ 0.37
Col7a1Q63870 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.37■□□□□ 0.37
Col7a1Q63870 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC17.37■□□□□ 0.37
Col7a1Q63870 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col7a1Q63870 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col7a1Q63870 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.36■□□□□ 0.37
Col7a1Q63870 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC17.36■□□□□ 0.37
Col7a1Q63870 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Col7a1Q63870 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col7a1Q63870 Ccnl2-201ENSMUST00000030944 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col7a1Q63870 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col7a1Q63870 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col7a1Q63870 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Col7a1Q63870 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Fancf-201ENSMUST00000169357 1691 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col7a1Q63870 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.35■□□□□ 0.37
Col7a1Q63870 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col7a1Q63870 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
Col7a1Q63870 Gm7514-201ENSMUST00000209475 934 ntBASIC17.34■□□□□ 0.37
Col7a1Q63870 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col7a1Q63870 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.34■□□□□ 0.37
Col7a1Q63870 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
Col7a1Q63870 Spaca1-201ENSMUST00000029927 1197 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col7a1Q63870 Spaca1-202ENSMUST00000084734 1149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col7a1Q63870 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col7a1Q63870 Zfp513-201ENSMUST00000031562 2213 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col7a1Q63870 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col7a1Q63870 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col7a1Q63870 Gm43653-201ENSMUST00000198136 1608 ntTSL 3 BASIC17.32■□□□□ 0.36
Col7a1Q63870 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.32■□□□□ 0.36
Col7a1Q63870 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col7a1Q63870 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.32■□□□□ 0.36
Col7a1Q63870 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col7a1Q63870 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col7a1Q63870 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 Trmt13-210ENSMUST00000198454 880 ntBASIC17.31■□□□□ 0.36
Col7a1Q63870 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC17.31■□□□□ 0.36
Col7a1Q63870 Dhrs13-201ENSMUST00000021187 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.31■□□□□ 0.36
Col7a1Q63870 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col7a1Q63870 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Col7a1Q63870 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Col7a1Q63870 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Gm10819-201ENSMUST00000099988 561 ntBASIC17.3■□□□□ 0.36
Col7a1Q63870 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
Col7a1Q63870 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC17.3■□□□□ 0.36
Col7a1Q63870 Ankrd9-205ENSMUST00000142012 1226 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col7a1Q63870 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.3■□□□□ 0.36
Col7a1Q63870 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 Gm9988-201ENSMUST00000069786 435 ntBASIC17.3■□□□□ 0.36
Col7a1Q63870 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col7a1Q63870 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.29■□□□□ 0.36
Col7a1Q63870 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col7a1Q63870 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC17.29■□□□□ 0.36
Col7a1Q63870 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col7a1Q63870 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col7a1Q63870 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col7a1Q63870 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col7a1Q63870 Tbc1d25-203ENSMUST00000143984 2184 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col7a1Q63870 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC17.29■□□□□ 0.36
Col7a1Q63870 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC17.29■□□□□ 0.36
Col7a1Q63870 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Col7a1Q63870 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 199.7 ms