Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Ubtd1-201ENSMUST00000026170 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Upf3bQ3ULL6 Dusp26-201ENSMUST00000036631 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Cdan1-201ENSMUST00000110700 5996 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Upf3bQ3ULL6 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Gm43006-201ENSMUST00000197702 1602 ntBASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Fbxw2-201ENSMUST00000028220 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC21.73■■□□□ 1.07
Upf3bQ3ULL6 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Upf3bQ3ULL6 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 Mblac1-201ENSMUST00000057773 1308 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC21.71■■□□□ 1.07
Upf3bQ3ULL6 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Upf3bQ3ULL6 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Upf3bQ3ULL6 Gm14207-203ENSMUST00000156538 988 ntTSL 2 BASIC21.7■■□□□ 1.06
Upf3bQ3ULL6 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.7■■□□□ 1.06
Upf3bQ3ULL6 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Upf3bQ3ULL6 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Utp11-201ENSMUST00000030738 1603 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Upf3bQ3ULL6 Eif2ak4-207ENSMUST00000110877 2134 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
Upf3bQ3ULL6 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Gm12922-201ENSMUST00000120626 809 ntBASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
Upf3bQ3ULL6 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Tmem59-202ENSMUST00000106753 1148 ntTSL 5 BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Josd2-211ENSMUST00000134398 563 ntTSL 5 BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Upf3bQ3ULL6 Kcnk1-201ENSMUST00000046765 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Gm14424-201ENSMUST00000143191 895 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Upf3bQ3ULL6 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms