Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Ttc6-201ENSMUST00000101398 1484 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Rnf40Q3U319 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC21■□□□□ 0.95
Rnf40Q3U319 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Shisa7-203ENSMUST00000119433 3481 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC21■□□□□ 0.95
Rnf40Q3U319 Llph-202ENSMUST00000130198 1463 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
Rnf40Q3U319 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC21■□□□□ 0.95
Rnf40Q3U319 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rnf40Q3U319 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rnf40Q3U319 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rnf40Q3U319 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rnf40Q3U319 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Golph3-205ENSMUST00000228671 2842 ntBASIC20.97■□□□□ 0.95
Rnf40Q3U319 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Pstpip1-201ENSMUST00000059206 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Rnf40Q3U319 Adat3-204ENSMUST00000038411 1411 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Dbp-203ENSMUST00000211357 1252 ntTSL 5 BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC20.96■□□□□ 0.95
Rnf40Q3U319 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rnf40Q3U319 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC20.95■□□□□ 0.95
Rnf40Q3U319 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Aplf-201ENSMUST00000032130 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Pus1-203ENSMUST00000086643 1868 ntAPPRIS P4 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Susd3-203ENSMUST00000119721 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf40Q3U319 2410002F23Rik-201ENSMUST00000055858 1982 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf40Q3U319 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf40Q3U319 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.94■□□□□ 0.94
Rnf40Q3U319 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.94■□□□□ 0.94
Rnf40Q3U319 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf40Q3U319 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Lyar-201ENSMUST00000087514 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Tusc3-201ENSMUST00000167992 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf40Q3U319 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Rnf40Q3U319 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf40Q3U319 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Rnf40Q3U319 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC20.92■□□□□ 0.94
Rnf40Q3U319 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf40Q3U319 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf40Q3U319 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf40Q3U319 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf40Q3U319 Cep78-201ENSMUST00000047704 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 31.7 ms