Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Peli3-201ENSMUST00000025834 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx2P43241 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx2P43241 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx2P43241 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC19.49■□□□□ 0.71
Cdx2P43241 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Cdx2P43241 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx2P43241 AC165080.2-201ENSMUST00000217491 1530 ntBASIC19.48■□□□□ 0.71
Cdx2P43241 Cmtm7-204ENSMUST00000216760 665 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx2P43241 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC19.48■□□□□ 0.71
Cdx2P43241 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx2P43241 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Cdx2P43241 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx2P43241 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx2P43241 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
Cdx2P43241 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.47■□□□□ 0.71
Cdx2P43241 Gm18671-201ENSMUST00000214826 683 ntBASIC19.47■□□□□ 0.71
Cdx2P43241 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx2P43241 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx2P43241 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx2P43241 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC19.47■□□□□ 0.71
Cdx2P43241 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Cdx2P43241 Ildr2-203ENSMUST00000192638 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdx2P43241 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdx2P43241 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdx2P43241 Sdccag3-204ENSMUST00000114102 2193 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Cdx2P43241 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Cdx2P43241 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.46■□□□□ 0.71
Cdx2P43241 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx2P43241 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx2P43241 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC19.45■□□□□ 0.7
Cdx2P43241 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx2P43241 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx2P43241 Vkorc1l1-201ENSMUST00000051758 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Cdx2P43241 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC19.44■□□□□ 0.7
Cdx2P43241 AC153962.1-201ENSMUST00000218530 1948 ntBASIC19.44■□□□□ 0.7
Cdx2P43241 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Cdx2P43241 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC19.44■□□□□ 0.7
Cdx2P43241 Gm27045-201ENSMUST00000182145 1402 ntBASIC19.43■□□□□ 0.7
Cdx2P43241 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC19.43■□□□□ 0.7
Cdx2P43241 AC112142.1-201ENSMUST00000228796 918 ntBASIC19.43■□□□□ 0.7
Cdx2P43241 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Cdx2P43241 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Cdx2P43241 Susd6-203ENSMUST00000220238 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx2P43241 Gm42418-201ENSMUST00000182010 1831 ntBASIC19.42■□□□□ 0.7
Cdx2P43241 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx2P43241 Anapc13-204ENSMUST00000190279 589 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx2P43241 Gm10033-202ENSMUST00000211874 928 ntBASIC19.42■□□□□ 0.7
Cdx2P43241 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC19.42■□□□□ 0.7
Cdx2P43241 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC19.42■□□□□ 0.7
Cdx2P43241 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx2P43241 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx2P43241 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Cdx2P43241 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Cdx2P43241 Adrm1-201ENSMUST00000061437 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Rer1-201ENSMUST00000030914 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
Cdx2P43241 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC19.41■□□□□ 0.7
Cdx2P43241 AV356131-201ENSMUST00000206201 750 ntBASIC19.41■□□□□ 0.7
Cdx2P43241 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Cdx2P43241 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC19.4■□□□□ 0.7
Cdx2P43241 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Gm42778-201ENSMUST00000199644 553 ntBASIC19.4■□□□□ 0.7
Cdx2P43241 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Cdx2P43241 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Paqr3-203ENSMUST00000112969 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Cdx2P43241 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx2P43241 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx2P43241 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx2P43241 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Cdx2P43241 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx2P43241 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx2P43241 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Cdx2P43241 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 22.8 ms