Protein–RNA interactions for Protein: P31648

Slc6a1, Sodium- and chloride-dependent GABA transporter 1, mousemouse

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Slc6a1P31648 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Slc6a1P31648 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
Slc6a1P31648 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Slc6a1P31648 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Slc6a1P31648 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Slc6a1P31648 Tmem164-205ENSMUST00000112891 1654 ntTSL 5 BASIC17.42■□□□□ 0.38
Slc6a1P31648 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Slc6a1P31648 Gm44428-201ENSMUST00000204474 874 ntBASIC17.41■□□□□ 0.38
Slc6a1P31648 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Slc6a1P31648 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Slc6a1P31648 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Slc6a1P31648 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Slc6a1P31648 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Slc6a1P31648 Cldnd1-204ENSMUST00000162057 1540 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Slc6a1P31648 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Slc6a1P31648 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Slc6a1P31648 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Slc6a1P31648 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Slc6a1P31648 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC17.4■□□□□ 0.38
Slc6a1P31648 Slc35b2-205ENSMUST00000224905 1906 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Slc6a1P31648 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Slc6a1P31648 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Slc6a1P31648 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Slc6a1P31648 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
Slc6a1P31648 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC17.39■□□□□ 0.38
Slc6a1P31648 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Slc6a1P31648 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Slc6a1P31648 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Slc6a1P31648 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Slc6a1P31648 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Slc6a1P31648 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC17.38■□□□□ 0.37
Slc6a1P31648 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
Slc6a1P31648 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Slc6a1P31648 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Slc6a1P31648 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
Slc6a1P31648 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Slc6a1P31648 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC17.37■□□□□ 0.37
Slc6a1P31648 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Gm27502-201ENSMUST00000183495 199 ntBASIC17.37■□□□□ 0.37
Slc6a1P31648 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC17.37■□□□□ 0.37
Slc6a1P31648 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC17.37■□□□□ 0.37
Slc6a1P31648 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Slc6a1P31648 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
Slc6a1P31648 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
Slc6a1P31648 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC17.36■□□□□ 0.37
Slc6a1P31648 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Slc6a1P31648 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Slc6a1P31648 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
Slc6a1P31648 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17.35■□□□□ 0.37
Slc6a1P31648 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
Slc6a1P31648 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC17.35■□□□□ 0.37
Slc6a1P31648 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC17.35■□□□□ 0.37
Slc6a1P31648 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Slc6a1P31648 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Slc6a1P31648 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Slc6a1P31648 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Slc6a1P31648 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Slc6a1P31648 Gm37035-201ENSMUST00000194809 2148 ntBASIC17.34■□□□□ 0.37
Slc6a1P31648 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Slc6a1P31648 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Slc6a1P31648 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.33■□□□□ 0.37
Slc6a1P31648 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC17.33■□□□□ 0.37
Slc6a1P31648 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Slc6a1P31648 Gm10420-201ENSMUST00000121713 882 ntBASIC17.33■□□□□ 0.36
Slc6a1P31648 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Slc6a1P31648 Map4k3-201ENSMUST00000025089 4225 ntAPPRIS P2 TSL 5 BASIC17.32■□□□□ 0.36
Slc6a1P31648 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
Slc6a1P31648 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Slc6a1P31648 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC17.32■□□□□ 0.36
Slc6a1P31648 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Slc6a1P31648 Usf1-210ENSMUST00000167546 1822 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
Slc6a1P31648 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms