Protein–RNA interactions for Protein: P20040

H-2 class II histocompatibility antigen, E-Q beta chain, mousemouse

Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
P20040 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
P20040 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
P20040 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
P20040 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
P20040 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
P20040 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
P20040 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
P20040 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC17.94■□□□□ 0.46
P20040 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC17.94■□□□□ 0.46
P20040 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
P20040 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
P20040 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC17.93■□□□□ 0.46
P20040 Gm45102-201ENSMUST00000207427 857 ntBASIC17.93■□□□□ 0.46
P20040 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
P20040 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
P20040 Crtc2-201ENSMUST00000029545 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
P20040 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
P20040 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC17.93■□□□□ 0.46
P20040 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
P20040 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
P20040 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC17.92■□□□□ 0.46
P20040 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Snhg20-203ENSMUST00000182811 2153 ntBASIC17.92■□□□□ 0.46
P20040 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC17.92■□□□□ 0.46
P20040 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Gm9959-201ENSMUST00000068277 390 ntBASIC17.92■□□□□ 0.46
P20040 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
P20040 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
P20040 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
P20040 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
P20040 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC17.91■□□□□ 0.46
P20040 1110032F04Rik-201ENSMUST00000054551 2578 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
P20040 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC17.91■□□□□ 0.46
P20040 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
P20040 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
P20040 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
P20040 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
P20040 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC17.9■□□□□ 0.46
P20040 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC17.9■□□□□ 0.46
P20040 Gm5131-201ENSMUST00000212776 1238 ntBASIC17.9■□□□□ 0.46
P20040 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
P20040 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
P20040 Zfp579-201ENSMUST00000108572 2157 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
P20040 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
P20040 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
P20040 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
P20040 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Gnas-205ENSMUST00000109083 730 ntTSL 2 BASIC17.89■□□□□ 0.45
P20040 Etf1-202ENSMUST00000180351 108 ntBASIC17.89■□□□□ 0.45
P20040 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC17.89■□□□□ 0.45
P20040 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC17.89■□□□□ 0.45
P20040 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 AC164883.3-201ENSMUST00000227396 1774 ntBASIC17.89■□□□□ 0.45
P20040 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
P20040 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
P20040 Gm14117-201ENSMUST00000122417 843 ntBASIC17.88■□□□□ 0.45
P20040 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC17.88■□□□□ 0.45
P20040 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
P20040 Tmem41a-201ENSMUST00000023562 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
P20040 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
P20040 Gm44949-201ENSMUST00000206423 1450 ntBASIC17.88■□□□□ 0.45
P20040 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
P20040 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC17.87■□□□□ 0.45
P20040 Gm10399-202ENSMUST00000202768 748 ntBASIC17.87■□□□□ 0.45
P20040 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC17.87■□□□□ 0.45
P20040 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Golph3-202ENSMUST00000226517 2359 ntBASIC17.87■□□□□ 0.45
P20040 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
P20040 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
P20040 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
P20040 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
P20040 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC17.86■□□□□ 0.45
P20040 4930527J03Rik-201ENSMUST00000094270 543 ntBASIC17.86■□□□□ 0.45
P20040 Tmem120a-201ENSMUST00000043378 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
P20040 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 152.6 ms