Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Lire1P11260 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lire1P11260 Srsf6-202ENSMUST00000126163 515 ntTSL 5 BASIC18.96■□□□□ 0.63
Lire1P11260 Dleu2-201ENSMUST00000180377 1165 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Lire1P11260 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.96■□□□□ 0.63
Lire1P11260 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lire1P11260 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Lire1P11260 Gm12504-201ENSMUST00000120860 2231 ntBASIC18.96■□□□□ 0.63
Lire1P11260 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Lire1P11260 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.95■□□□□ 0.62
Lire1P11260 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lire1P11260 Kcnip2-209ENSMUST00000162528 2395 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Lire1P11260 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Lire1P11260 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Lire1P11260 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Lire1P11260 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Lire1P11260 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.94■□□□□ 0.62
Lire1P11260 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC18.94■□□□□ 0.62
Lire1P11260 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
Lire1P11260 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 Pex7-203ENSMUST00000166511 1047 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC18.94■□□□□ 0.62
Lire1P11260 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 Fbxw2-203ENSMUST00000113075 2260 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Lire1P11260 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.93■□□□□ 0.62
Lire1P11260 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lire1P11260 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC18.93■□□□□ 0.62
Lire1P11260 Gm9847-201ENSMUST00000052528 599 ntBASIC18.93■□□□□ 0.62
Lire1P11260 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Lire1P11260 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lire1P11260 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
Lire1P11260 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lire1P11260 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Lire1P11260 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Gm5602-201ENSMUST00000146366 1763 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC18.92■□□□□ 0.62
Lire1P11260 A730035I17Rik-205ENSMUST00000205851 684 ntBASIC18.92■□□□□ 0.62
Lire1P11260 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC18.92■□□□□ 0.62
Lire1P11260 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Fance-201ENSMUST00000088007 1581 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Lire1P11260 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Lire1P11260 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Lire1P11260 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.91■□□□□ 0.62
Lire1P11260 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Gm40881-201ENSMUST00000223397 166 ntBASIC18.91■□□□□ 0.62
Lire1P11260 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC18.91■□□□□ 0.62
Lire1P11260 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC18.91■□□□□ 0.62
Lire1P11260 Aktip-205ENSMUST00000125257 2079 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Get4-201ENSMUST00000026976 2107 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Lire1P11260 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Klhdc2-201ENSMUST00000021362 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.9■□□□□ 0.62
Lire1P11260 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 March2-210ENSMUST00000186022 2470 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.9■□□□□ 0.62
Lire1P11260 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Hsd11b2-201ENSMUST00000034363 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Rbfa-201ENSMUST00000025462 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Lire1P11260 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Lire1P11260 Akt1s1-201ENSMUST00000054343 1592 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
Lire1P11260 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Lire1P11260 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
Lire1P11260 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.89■□□□□ 0.61
Lire1P11260 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 Nrbp2-208ENSMUST00000228366 1863 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Lire1P11260 Fgfr1-215ENSMUST00000179592 5041 ntTSL 5 BASIC18.89■□□□□ 0.61
Lire1P11260 Gm22238-201ENSMUST00000175222 88 ntBASIC18.89■□□□□ 0.61
Lire1P11260 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Lire1P11260 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
Lire1P11260 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.89■□□□□ 0.61
Lire1P11260 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Lire1P11260 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 79.1 ms