Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC18.37■□□□□ 0.53
Lmx1bO88609 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.37■□□□□ 0.53
Lmx1bO88609 Gm7143-201ENSMUST00000222811 859 ntBASIC18.37■□□□□ 0.53
Lmx1bO88609 Serp2-204ENSMUST00000228055 705 ntBASIC18.37■□□□□ 0.53
Lmx1bO88609 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Lmx1bO88609 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC18.37■□□□□ 0.53
Lmx1bO88609 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Lmx1bO88609 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Gm10657-201ENSMUST00000193528 1031 ntBASIC18.36■□□□□ 0.53
Lmx1bO88609 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Krt8-ps-201ENSMUST00000208495 945 ntBASIC18.36■□□□□ 0.53
Lmx1bO88609 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Lmx1bO88609 Gorasp2-201ENSMUST00000028509 2238 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
Lmx1bO88609 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC18.35■□□□□ 0.53
Lmx1bO88609 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Lmx1bO88609 Zfp69-201ENSMUST00000106280 2362 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
Lmx1bO88609 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
Lmx1bO88609 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lmx1bO88609 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC18.34■□□□□ 0.53
Lmx1bO88609 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.34■□□□□ 0.53
Lmx1bO88609 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lmx1bO88609 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
Lmx1bO88609 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Lmx1bO88609 Ccdc61-201ENSMUST00000098780 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lmx1bO88609 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.53
Lmx1bO88609 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Lmx1bO88609 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
Lmx1bO88609 Slc27a3-201ENSMUST00000029541 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Lmx1bO88609 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lmx1bO88609 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lmx1bO88609 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC18.33■□□□□ 0.52
Lmx1bO88609 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Lmx1bO88609 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Lmx1bO88609 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Lmx1bO88609 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Lmx1bO88609 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lmx1bO88609 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lmx1bO88609 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Lmx1bO88609 Gm43137-201ENSMUST00000198052 594 ntBASIC18.32■□□□□ 0.52
Lmx1bO88609 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Lmx1bO88609 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
Lmx1bO88609 AC164883.3-201ENSMUST00000227396 1774 ntBASIC18.32■□□□□ 0.52
Lmx1bO88609 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.31■□□□□ 0.52
Lmx1bO88609 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Hyal2-203ENSMUST00000193747 1532 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Spint1-201ENSMUST00000028783 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Lmx1bO88609 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Lmx1bO88609 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lmx1bO88609 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lmx1bO88609 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
Lmx1bO88609 Ugp2-201ENSMUST00000060895 2044 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Lmx1bO88609 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lmx1bO88609 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
Lmx1bO88609 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Lmx1bO88609 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC18.3■□□□□ 0.52
Lmx1bO88609 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC18.3■□□□□ 0.52
Lmx1bO88609 Gm43403-201ENSMUST00000198011 1786 ntBASIC18.3■□□□□ 0.52
Lmx1bO88609 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lmx1bO88609 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lmx1bO88609 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Lmx1bO88609 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC18.29■□□□□ 0.52
Lmx1bO88609 Junb-201ENSMUST00000064922 1809 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Lmx1bO88609 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Lmx1bO88609 Bin1-201ENSMUST00000025239 2451 ntAPPRIS P3 TSL 2 BASIC18.29■□□□□ 0.52
Lmx1bO88609 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Lmx1bO88609 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Lmx1bO88609 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lmx1bO88609 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Lmx1bO88609 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lmx1bO88609 Gm26646-201ENSMUST00000180715 1490 ntTSL 5 BASIC18.28■□□□□ 0.52
Lmx1bO88609 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lmx1bO88609 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Lmx1bO88609 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms