Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
Hmgb3O54879 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb3O54879 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
Hmgb3O54879 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Hmgb3O54879 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
Hmgb3O54879 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Gm15893-201ENSMUST00000143208 1559 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
Hmgb3O54879 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
Hmgb3O54879 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC16.83■□□□□ 0.28
Hmgb3O54879 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC16.82■□□□□ 0.28
Hmgb3O54879 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
Hmgb3O54879 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
Hmgb3O54879 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
Hmgb3O54879 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Hmgb3O54879 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC16.81■□□□□ 0.28
Hmgb3O54879 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Hmgb3O54879 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Hmgb3O54879 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Hmgb3O54879 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC16.8■□□□□ 0.28
Hmgb3O54879 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
Hmgb3O54879 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Tinagl1-202ENSMUST00000105998 1976 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Hmgb3O54879 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Hras-207ENSMUST00000168550 2272 ntTSL 5 BASIC16.79■□□□□ 0.28
Hmgb3O54879 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC16.79■□□□□ 0.28
Hmgb3O54879 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Tmub1-202ENSMUST00000115033 1598 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Hmgb3O54879 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
Hmgb3O54879 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Hmgb3O54879 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Gjc2-202ENSMUST00000108793 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
Hmgb3O54879 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 AC164883.3-201ENSMUST00000227396 1774 ntBASIC16.78■□□□□ 0.28
Hmgb3O54879 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Cask-204ENSMUST00000115438 8366 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Hmgb3O54879 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb3O54879 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC16.77■□□□□ 0.28
Hmgb3O54879 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Hmgb3O54879 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb3O54879 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
Hmgb3O54879 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC16.77■□□□□ 0.28
Hmgb3O54879 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Hmgb3O54879 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Hmgb3O54879 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Hmgb3O54879 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC16.77■□□□□ 0.27
Hmgb3O54879 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Hmgb3O54879 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Maf1-204ENSMUST00000160172 1537 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Hmgb3O54879 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Kcnip1-203ENSMUST00000109340 1840 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Hmgb3O54879 Gm44428-201ENSMUST00000204474 874 ntBASIC16.76■□□□□ 0.27
Hmgb3O54879 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Hmgb3O54879 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms