Protein–RNA interactions for Protein: O35493

Clk4, Dual specificity protein kinase CLK4, mousemouse

Predictions only

Length 481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk4O35493 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC19.41■□□□□ 0.7
Clk4O35493 Ptms-201ENSMUST00000032216 1149 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clk4O35493 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Clk4O35493 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC19.41■□□□□ 0.7
Clk4O35493 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clk4O35493 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Clk4O35493 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk4O35493 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Clk4O35493 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk4O35493 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clk4O35493 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC19.4■□□□□ 0.7
Clk4O35493 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk4O35493 Gm4430-201ENSMUST00000192413 1943 ntBASIC19.4■□□□□ 0.7
Clk4O35493 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Clk4O35493 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Clk4O35493 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Clk4O35493 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Clk4O35493 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC19.39■□□□□ 0.7
Clk4O35493 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC19.39■□□□□ 0.7
Clk4O35493 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk4O35493 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk4O35493 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC19.39■□□□□ 0.69
Clk4O35493 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Clk4O35493 Gm7143-201ENSMUST00000222811 859 ntBASIC19.39■□□□□ 0.69
Clk4O35493 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk4O35493 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Clk4O35493 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk4O35493 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Clk4O35493 Prdm11-205ENSMUST00000178666 1870 ntTSL 5 BASIC19.39■□□□□ 0.69
Clk4O35493 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Clk4O35493 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC19.38■□□□□ 0.69
Clk4O35493 Avl9-203ENSMUST00000177249 1614 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Clk4O35493 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.38■□□□□ 0.69
Clk4O35493 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clk4O35493 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clk4O35493 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Clk4O35493 Gm15043-201ENSMUST00000118843 1543 ntBASIC19.37■□□□□ 0.69
Clk4O35493 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC19.37■□□□□ 0.69
Clk4O35493 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk4O35493 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC19.37■□□□□ 0.69
Clk4O35493 AC117245.1-201ENSMUST00000215481 566 ntTSL 3 BASIC19.37■□□□□ 0.69
Clk4O35493 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
Clk4O35493 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk4O35493 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk4O35493 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC19.37■□□□□ 0.69
Clk4O35493 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Clk4O35493 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk4O35493 Emc10-201ENSMUST00000118515 1662 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk4O35493 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Clk4O35493 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk4O35493 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Clk4O35493 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Clk4O35493 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC19.35■□□□□ 0.69
Clk4O35493 Gm12922-201ENSMUST00000120626 809 ntBASIC19.35■□□□□ 0.69
Clk4O35493 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC19.35■□□□□ 0.69
Clk4O35493 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Clk4O35493 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Gm9870-201ENSMUST00000063874 645 ntBASIC19.35■□□□□ 0.69
Clk4O35493 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Clk4O35493 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.34■□□□□ 0.69
Clk4O35493 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk4O35493 Dgcr6-201ENSMUST00000066027 1050 ntAPPRIS P4 TSL 2 BASIC19.34■□□□□ 0.69
Clk4O35493 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Clk4O35493 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clk4O35493 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clk4O35493 Naxd-202ENSMUST00000177955 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Clk4O35493 C1qc-201ENSMUST00000046332 1203 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clk4O35493 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clk4O35493 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Clk4O35493 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Clk4O35493 Tmem80-208ENSMUST00000145184 1805 ntTSL 5 BASIC19.32■□□□□ 0.68
Clk4O35493 Cers1-202ENSMUST00000140239 2711 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Abhd12-201ENSMUST00000056149 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Clk4O35493 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Clk4O35493 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Clk4O35493 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Clk4O35493 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Clk4O35493 Slc26a10-201ENSMUST00000095270 2215 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
Clk4O35493 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC19.31■□□□□ 0.68
Clk4O35493 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Clk4O35493 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk4O35493 Gm21988-202ENSMUST00000176268 1621 ntAPPRIS P5 TSL 5 BASIC19.3■□□□□ 0.68
Clk4O35493 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Clk4O35493 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Clk4O35493 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 43.1 ms