Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdhgb8A0A140LI48 Dnajb2-207ENSMUST00000188290 1855 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdhgb8A0A140LI48 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Pcdhgb8A0A140LI48 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC18.21■□□□□ 0.51
Pcdhgb8A0A140LI48 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.21■□□□□ 0.51
Pcdhgb8A0A140LI48 Foxj2-201ENSMUST00000003238 5283 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Pcdhgb8A0A140LI48 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC18.21■□□□□ 0.5
Pcdhgb8A0A140LI48 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Tcte2-202ENSMUST00000127032 1875 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Pcdhgb8A0A140LI48 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdhgb8A0A140LI48 Git2-214ENSMUST00000155908 2338 ntTSL 5 BASIC18.19■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm9959-201ENSMUST00000068277 390 ntBASIC18.19■□□□□ 0.5
Pcdhgb8A0A140LI48 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdhgb8A0A140LI48 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm28536-201ENSMUST00000190971 1317 ntBASIC18.19■□□□□ 0.5
Pcdhgb8A0A140LI48 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm5112-201ENSMUST00000204407 2368 ntBASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Pcdhgb8A0A140LI48 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm14117-201ENSMUST00000122417 843 ntBASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
Pcdhgb8A0A140LI48 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Plpp1-201ENSMUST00000016144 1598 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Ccng2-201ENSMUST00000031331 2810 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Rcor3-206ENSMUST00000192491 1623 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Pcdhgb8A0A140LI48 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Tinagl1-209ENSMUST00000175992 1847 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm5131-201ENSMUST00000212776 1238 ntBASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Gm10642-201ENSMUST00000098589 1610 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Pcdhgb8A0A140LI48 Cers5-201ENSMUST00000023762 2096 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.5
Pcdhgb8A0A140LI48 Rell2-211ENSMUST00000176902 1835 ntTSL 5 BASIC18.14■□□□□ 0.5
Pcdhgb8A0A140LI48 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Ctsz-201ENSMUST00000016400 1441 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Pcdhgb8A0A140LI48 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Mettl24-201ENSMUST00000058747 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Etf1-202ENSMUST00000180351 108 ntBASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Msl3l2-201ENSMUST00000063138 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Pcdhgb8A0A140LI48 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Mum1-201ENSMUST00000020365 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Gm11847-201ENSMUST00000125165 1119 ntBASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Rap1a-202ENSMUST00000197094 782 ntTSL 3 BASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Pcdhgb8A0A140LI48 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 16.8 ms