Protein–RNA interactions for Protein: A0A0B4J1H0

Trbv12-1, T cell receptor beta, variable 12-1 (Fragment), mousemouse

Predictions only

Length 124 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv12-1A0A0B4J1H0 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Lemd3-202ENSMUST00000119944 4743 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Dennd6a-202ENSMUST00000203874 2677 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.06■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Tead2-201ENSMUST00000033060 2140 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Kcnc3-202ENSMUST00000107907 5281 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Golgb1-201ENSMUST00000023534 498 ntBASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 AA543186-201ENSMUST00000180841 1696 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Olig1-201ENSMUST00000056882 2162 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Hsd17b3-202ENSMUST00000166224 1286 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Trp53rka-201ENSMUST00000039007 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Fcho2-201ENSMUST00000040340 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.02■□□□□ 0.48
Trbv12-1A0A0B4J1H0 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Trbv12-1A0A0B4J1H0 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Crlf3-203ENSMUST00000103233 2230 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Zfp618-201ENSMUST00000030043 1582 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Rspo1-201ENSMUST00000030687 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Gm26558-201ENSMUST00000180559 861 ntAPPRIS P1 BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Gm9847-201ENSMUST00000052528 599 ntBASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Spry1-203ENSMUST00000108109 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 3830408C21Rik-205ENSMUST00000225426 1898 ntBASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Rem2-202ENSMUST00000164766 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Gm8770-201ENSMUST00000121113 1109 ntBASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Mir6236-201ENSMUST00000184437 123 ntBASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Trbv12-1A0A0B4J1H0 Cdc20-201ENSMUST00000006565 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 103.7 ms