Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm12194-201ENSMUST00000117756 1012 ntBASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Nr5a1os-201ENSMUST00000146954 926 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Ndufc2-202ENSMUST00000149122 470 ntTSL 2 BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm16081-201ENSMUST00000155992 684 ntTSL 3 BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm25554-201ENSMUST00000158075 113 ntBASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm21844-201ENSMUST00000178699 663 ntTSL 3 BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm7596-202ENSMUST00000202171 737 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm18514-201ENSMUST00000218980 436 ntBASIC12.35□□□□□ -0.43
Trim54Q9ERP3 CT009527.1-201ENSMUST00000224205 339 ntBASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Fam212a-201ENSMUST00000048568 1025 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Tmem176b-202ENSMUST00000164733 1648 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Ccdc114-201ENSMUST00000038720 2460 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Metap2-201ENSMUST00000047910 4424 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Fyb2-201ENSMUST00000106803 3136 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Vezf1-201ENSMUST00000018521 4583 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Gm43321-201ENSMUST00000198897 2409 ntBASIC12.35□□□□□ -0.43
Trim54Q9ERP3 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm18294-201ENSMUST00000176980 1748 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm20757-201ENSMUST00000182870 1604 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Maats1-201ENSMUST00000023501 2750 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Crygc-202ENSMUST00000114064 612 ntAPPRIS ALT1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm15374-201ENSMUST00000119313 844 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm11457-203ENSMUST00000146846 676 ntTSL 3 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Zfp667-204ENSMUST00000153840 596 ntTSL 3 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm22379-201ENSMUST00000157480 131 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm25951-201ENSMUST00000175330 64 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm19015-201ENSMUST00000184002 1189 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm18968-201ENSMUST00000221319 862 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gbgt1-201ENSMUST00000028172 1084 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Asna1-201ENSMUST00000064314 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Cdh18-204ENSMUST00000165614 2162 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Ccdc60-202ENSMUST00000086483 2168 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Clasp1-216ENSMUST00000189738 5373 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Zfp532-202ENSMUST00000169679 5003 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Arih1-202ENSMUST00000165322 1431 ntTSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Amotl2-211ENSMUST00000153965 4222 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Megf11-201ENSMUST00000068967 6680 ntTSL 2 BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Gm5608-201ENSMUST00000210253 2290 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 AU015791-201ENSMUST00000223443 1457 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Fopnl-201ENSMUST00000023357 1465 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Kifap3-202ENSMUST00000077642 4012 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Trim54Q9ERP3 Arhgap1-202ENSMUST00000111329 3201 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Trim54Q9ERP3 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.43
Trim54Q9ERP3 Atad2-201ENSMUST00000038194 5684 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.43
Trim54Q9ERP3 Pde6c-201ENSMUST00000025956 2586 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
Trim54Q9ERP3 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Gm43242-201ENSMUST00000199507 1776 ntBASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Cntnap1-201ENSMUST00000103109 5440 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Rab3c-202ENSMUST00000223922 2398 ntBASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Dach2-201ENSMUST00000067219 2520 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Tiprl-201ENSMUST00000043235 4380 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Trmt10b-202ENSMUST00000107800 983 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Gm11801-201ENSMUST00000117807 746 ntBASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Gm13600-201ENSMUST00000117949 744 ntBASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Gm12274-201ENSMUST00000120062 385 ntBASIC12.33□□□□□ -0.44
Trim54Q9ERP3 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 42.8 ms