Protein–RNA interactions for Protein: Q99NB9

Sf3b1, Splicing factor 3B subunit 1, mousemouse

Known RBP Predictions only

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3b1Q99NB9 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Cbx7-203ENSMUST00000109616 2899 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Dlgap1-210ENSMUST00000146730 3936 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Cln3-201ENSMUST00000032962 2386 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Chac2-202ENSMUST00000101394 1315 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm2128-201ENSMUST00000108009 2560 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Vamp1-201ENSMUST00000032487 2772 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 AC130823.1-201ENSMUST00000228929 1549 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm45011-201ENSMUST00000207620 2297 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Adgrg5-201ENSMUST00000074570 2802 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Rtbdn-202ENSMUST00000109740 1363 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Atp6v0a1-201ENSMUST00000044721 4008 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Arhgap31-201ENSMUST00000023487 7964 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm7278-201ENSMUST00000119836 1401 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Kif26b-201ENSMUST00000160789 6216 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Clcc1-202ENSMUST00000106609 2043 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Bpgm-201ENSMUST00000045372 2220 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 3830432H09Rik-202ENSMUST00000188909 2414 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Ccdc163-204ENSMUST00000106464 1213 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Vbp1-202ENSMUST00000114070 632 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm11340-201ENSMUST00000119226 412 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Pfdn6-202ENSMUST00000173363 871 ntTSL 2 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm10100-201ENSMUST00000179726 363 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm19015-201ENSMUST00000184002 1189 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm43380-201ENSMUST00000200421 220 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Cdipt-204ENSMUST00000206346 806 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm45570-201ENSMUST00000211137 495 ntTSL 5 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm30671-201ENSMUST00000214898 318 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Olfr1395-201ENSMUST00000059379 954 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Olfr61-201ENSMUST00000084455 936 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Mpv17-202ENSMUST00000200744 1653 ntTSL 2 BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Tie1-201ENSMUST00000047421 4091 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Sf3b1Q99NB9 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sf3b1Q99NB9 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sf3b1Q99NB9 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
Sf3b1Q99NB9 Hltf-201ENSMUST00000002502 4955 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Nek4-201ENSMUST00000050171 2793 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm1110-201ENSMUST00000115261 1996 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Tmprss4-201ENSMUST00000034599 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm13556-201ENSMUST00000132692 1412 ntTSL 3 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 AC126257.2-201ENSMUST00000215507 2300 ntBASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Neat1-202ENSMUST00000174287 3004 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Pamr1-201ENSMUST00000028612 2864 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm8111-201ENSMUST00000117659 987 ntBASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 4930506C21Rik-203ENSMUST00000130639 909 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm20536-201ENSMUST00000172588 406 ntTSL 3 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm17597-201ENSMUST00000181220 1115 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm29261-201ENSMUST00000188535 678 ntTSL 5 BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 D5Ertd615e-203ENSMUST00000198493 1032 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm44008-201ENSMUST00000204345 412 ntBASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm45856-201ENSMUST00000212752 416 ntBASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Mitd1-201ENSMUST00000027257 1231 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 1600002K03Rik-201ENSMUST00000041882 678 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm25517-201ENSMUST00000083865 134 ntBASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Gm5544-201ENSMUST00000098828 891 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Rab8a-201ENSMUST00000003121 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Adamts1-201ENSMUST00000023610 4884 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Sf3b1Q99NB9 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Asb3-202ENSMUST00000117883 2509 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Ndufaf1-203ENSMUST00000110802 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 2310043M15Rik-201ENSMUST00000180967 1580 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Fyn-207ENSMUST00000146287 2135 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
Sf3b1Q99NB9 Chrne-201ENSMUST00000014753 1616 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 58.2 ms