Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Sh3pxd2a-202ENSMUST00000111800 10380 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Vmn1r24-201ENSMUST00000228097 1901 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Sox1P53783 Ttc23l-201ENSMUST00000022857 1931 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Ighv1-49-201ENSMUST00000103519 294 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Sox1P53783 Cst10-202ENSMUST00000109938 729 ntAPPRIS P1 TSL 2 BASIC11.67□□□□□ -0.54
Sox1P53783 Olfr29-ps1-201ENSMUST00000117959 963 ntAPPRIS P1 BASIC11.67□□□□□ -0.54
Sox1P53783 1700095J12Rik-201ENSMUST00000124620 737 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Gm17225-201ENSMUST00000172051 497 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Gm21778-201ENSMUST00000178779 471 ntBASIC11.67□□□□□ -0.54
Sox1P53783 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Gm9192-201ENSMUST00000183221 985 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Gm30946-201ENSMUST00000198288 724 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Fkbp6-203ENSMUST00000201784 1235 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Gm43460-201ENSMUST00000202491 1057 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Gm31557-201ENSMUST00000213825 973 ntTSL 5 BASIC11.67□□□□□ -0.54
Sox1P53783 CAAA01125382.3-201ENSMUST00000215277 643 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Gm33016-201ENSMUST00000221224 677 ntTSL 3 BASIC11.67□□□□□ -0.54
Sox1P53783 CT030035.1-201ENSMUST00000223964 935 ntBASIC11.67□□□□□ -0.54
Sox1P53783 AC192333.3-201ENSMUST00000224041 463 ntBASIC11.67□□□□□ -0.54
Sox1P53783 AC122035.1-201ENSMUST00000227576 1016 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Cst10-201ENSMUST00000047008 804 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 4921508M14Rik-201ENSMUST00000061679 1099 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Gm25580-201ENSMUST00000083409 327 ntBASIC11.67□□□□□ -0.54
Sox1P53783 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC11.67□□□□□ -0.54
Sox1P53783 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC11.67□□□□□ -0.54
Sox1P53783 A530053M12Rik-201ENSMUST00000187918 1467 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Ipo13-201ENSMUST00000036156 3595 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Gm5740-201ENSMUST00000211003 1857 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.67□□□□□ -0.54
Sox1P53783 Rbpjl-201ENSMUST00000017151 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Vmn1r65-201ENSMUST00000086338 2682 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Rbm47-204ENSMUST00000113726 4703 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Cbs-203ENSMUST00000118504 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Pcnx-201ENSMUST00000021567 12139 ntAPPRIS P2 TSL 2 BASIC11.67□□□□□ -0.54
Sox1P53783 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC11.67□□□□□ -0.54
Sox1P53783 Muc6-202ENSMUST00000189314 5087 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Ap5s1-203ENSMUST00000110208 1521 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Tkfc-201ENSMUST00000037678 2253 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Unc5c-202ENSMUST00000106236 9646 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Camta1-201ENSMUST00000049790 8423 ntAPPRIS P2 TSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Hnrnpdl-202ENSMUST00000128187 2752 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Sema4a-213ENSMUST00000165898 3125 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Trpm4-209ENSMUST00000211743 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Gm23129-201ENSMUST00000104259 132 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Wfdc2-203ENSMUST00000109345 558 ntAPPRIS ALT2 TSL 3 BASIC11.66□□□□□ -0.54
Sox1P53783 Rpl7a-ps11-201ENSMUST00000118791 801 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gemin7-205ENSMUST00000122127 652 ntAPPRIS P1 TSL 3 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm11770-201ENSMUST00000135048 548 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 4933438A12Rik-201ENSMUST00000144579 1013 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm24992-201ENSMUST00000157412 130 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm18733-202ENSMUST00000174447 401 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm5873-201ENSMUST00000177157 1066 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Erg-209ENSMUST00000177450 1280 ntTSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm6946-201ENSMUST00000182237 987 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm5291-201ENSMUST00000201965 899 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm6794-201ENSMUST00000203829 457 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Fut1-202ENSMUST00000209379 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Gm45574-201ENSMUST00000210921 331 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm45680-201ENSMUST00000211135 214 ntTSL 3 BASIC11.66□□□□□ -0.54
Sox1P53783 AC163703.1-201ENSMUST00000214133 339 ntAPPRIS P1 TSL 2 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm18391-201ENSMUST00000217189 658 ntBASIC11.66□□□□□ -0.54
Sox1P53783 AC124742.1-201ENSMUST00000219909 547 ntTSL 3 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm19605-205ENSMUST00000221712 677 ntTSL 3 BASIC11.66□□□□□ -0.54
Sox1P53783 AC153153.1-201ENSMUST00000225803 793 ntBASIC11.66□□□□□ -0.54
Sox1P53783 AC159006.3-201ENSMUST00000226918 664 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Eif4ebp3-201ENSMUST00000036765 744 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Olfr761-201ENSMUST00000049620 1029 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Sox1P53783 Fam25c-201ENSMUST00000052126 408 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Lsm8-201ENSMUST00000056398 807 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 AY761184-201ENSMUST00000071886 503 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Olfr127-201ENSMUST00000076331 1095 ntAPPRIS P1 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm9701-201ENSMUST00000077976 427 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm16477-201ENSMUST00000085365 801 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Gm10271-201ENSMUST00000092165 156 ntAPPRIS P1 TSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Gm17415-201ENSMUST00000096427 789 ntBASIC11.66□□□□□ -0.54
Sox1P53783 C1qtnf1-202ENSMUST00000106286 2512 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 C1qtnf1-201ENSMUST00000017590 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Ppip5k1-202ENSMUST00000110625 5226 ntAPPRIS ALT2 TSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Vmn1r45-202ENSMUST00000226167 2893 ntBASIC11.66□□□□□ -0.54
Sox1P53783 Nin-204ENSMUST00000169074 6636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Acnat2-202ENSMUST00000107698 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Zfand4-210ENSMUST00000223495 1751 ntTSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Cap2-201ENSMUST00000021802 3713 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Lin28a-201ENSMUST00000051674 3505 ntAPPRIS P1 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Pdp1-203ENSMUST00000108297 4201 ntAPPRIS P3 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Tulp2-203ENSMUST00000107758 1597 ntTSL 5 BASIC11.66□□□□□ -0.54
Sox1P53783 Tesmin-203ENSMUST00000142193 2279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.66□□□□□ -0.54
Sox1P53783 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.66□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms