Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Ip6k2-204ENSMUST00000192307 1191 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm4935-201ENSMUST00000221316 1198 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Dph3-201ENSMUST00000022461 1057 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 AC154239.3-201ENSMUST00000226933 674 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 CT025535.1-201ENSMUST00000227172 491 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Gp9-201ENSMUST00000032133 881 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 n-R5s195-201ENSMUST00000082891 119 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Mamdc2-201ENSMUST00000036069 3338 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Dag1-202ENSMUST00000166905 4244 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Cdk15-201ENSMUST00000114248 1477 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 AC156802.2-201ENSMUST00000225239 5740 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Gpc6-202ENSMUST00000088483 3488 ntAPPRIS P3 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Tsen2-201ENSMUST00000040234 2106 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Ctnnd1-216ENSMUST00000111690 5945 ntTSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Aldoart2-201ENSMUST00000080123 1658 ntAPPRIS P1 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Sdk2-201ENSMUST00000041627 11287 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm17029-203ENSMUST00000153443 2758 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Zfp36-201ENSMUST00000051241 2790 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Cnr2-202ENSMUST00000097843 3867 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Nlrp12-201ENSMUST00000108653 6928 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 AC125374.1-201ENSMUST00000213573 1400 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Fam53c-202ENSMUST00000097622 4256 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Olfr6-203ENSMUST00000213651 4457 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 AC129336.1-201ENSMUST00000220224 2277 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Dspp-201ENSMUST00000112771 4431 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Amz2-203ENSMUST00000103061 1832 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Adamts4-203ENSMUST00000219033 4386 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Ank3-203ENSMUST00000092431 5823 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Cntrl-206ENSMUST00000113037 5970 ntTSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm43127-201ENSMUST00000195890 2789 ntBASIC9.37□□□□□ -0.91
Hmgb3O54879 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 1700017B05Rik-201ENSMUST00000034846 4152 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Cd55-201ENSMUST00000027650 2533 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Itgal-205ENSMUST00000170971 3662 ntAPPRIS ALT2 TSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Raver1-201ENSMUST00000115487 3470 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gpr68-201ENSMUST00000053668 3099 ntAPPRIS P1 TSL 2 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Ica1-204ENSMUST00000115520 1876 ntAPPRIS P2 TSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Fthl17d-201ENSMUST00000105004 856 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Pced1c-ps-201ENSMUST00000187740 751 ntBASIC9.37□□□□□ -0.91
Hmgb3O54879 Nipsnap3a-204ENSMUST00000188045 1099 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm38241-201ENSMUST00000192641 898 ntBASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm44799-201ENSMUST00000207639 1202 ntBASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm7619-201ENSMUST00000210649 1282 ntBASIC9.37□□□□□ -0.91
Hmgb3O54879 AC139319.1-201ENSMUST00000223331 690 ntTSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Rpl28-201ENSMUST00000032597 1106 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gps2-201ENSMUST00000057884 1220 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Prss2-201ENSMUST00000070380 815 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Sipa1l1-208ENSMUST00000222298 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Phf21a-203ENSMUST00000090586 6310 ntAPPRIS ALT2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Thrap3-201ENSMUST00000080919 4378 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Dgkh-201ENSMUST00000074729 3967 ntAPPRIS P1 TSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Lrrc55-201ENSMUST00000099930 2217 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Cyp2s1-202ENSMUST00000108395 3161 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Szt2-201ENSMUST00000075406 10965 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm43154-214ENSMUST00000211225 1420 ntTSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Armcx2-202ENSMUST00000113193 3666 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gramd1b-212ENSMUST00000165104 3824 ntAPPRIS P2 TSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 C730027H18Rik-201ENSMUST00000218381 2300 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Gm10463-202ENSMUST00000195772 2889 ntBASIC9.37□□□□□ -0.91
Hmgb3O54879 Rab19-201ENSMUST00000031986 1575 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Synrg-202ENSMUST00000092834 7115 ntAPPRIS P2 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Arhgef9-201ENSMUST00000113873 2117 ntTSL 5 BASIC9.37□□□□□ -0.91
Hmgb3O54879 Srcap-201ENSMUST00000066582 4545 ntTSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Sgk3-203ENSMUST00000168907 3779 ntAPPRIS P1 TSL 1 (best) BASIC9.37□□□□□ -0.91
Hmgb3O54879 Prdm5-204ENSMUST00000172638 1714 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Zfp606-202ENSMUST00000123589 3509 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Apba2-201ENSMUST00000032732 3321 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Abi1-204ENSMUST00000114544 2790 ntAPPRIS ALT1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Pdzk1-202ENSMUST00000107069 2219 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Msrb3-201ENSMUST00000092143 3843 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 AC154537.1-201ENSMUST00000226101 1304 ntBASIC9.36□□□□□ -0.91
Hmgb3O54879 Nmt2-202ENSMUST00000091504 1676 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 1500004A13Rik-202ENSMUST00000183707 6054 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Rps6ka6-204ENSMUST00000113428 4135 ntAPPRIS ALT2 TSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Dsg1a-201ENSMUST00000077146 5686 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Nod1-202ENSMUST00000168172 4064 ntAPPRIS P1 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC9.36□□□□□ -0.91
Hmgb3O54879 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 Abcc3-206ENSMUST00000178136 5005 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.91
Hmgb3O54879 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC9.36□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 262.5 ms