Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Ighv1-48-201ENSMUST00000191795 294 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm34767-201ENSMUST00000191813 1062 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Acy1-208ENSMUST00000214275 1284 ntTSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm2553-201ENSMUST00000215986 605 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 CT009713.8-201ENSMUST00000225448 560 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Ankrd7-201ENSMUST00000031489 1190 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Smtn-210ENSMUST00000170588 3386 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Tro-203ENSMUST00000112709 6610 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm20646-201ENSMUST00000176807 1316 ntTSL 3 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gpatch2l-204ENSMUST00000221368 4355 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Zmiz2-205ENSMUST00000109787 4116 ntAPPRIS P2 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Mtmr11-201ENSMUST00000054356 2778 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Tardbp-210ENSMUST00000172073 6513 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Fank1-201ENSMUST00000065359 2004 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Ttc30b-201ENSMUST00000099996 2737 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Bcl11a-204ENSMUST00000118955 1505 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Smc4-202ENSMUST00000107803 3983 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Stom-201ENSMUST00000028241 2787 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Folr1-201ENSMUST00000106981 960 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Folr1-202ENSMUST00000106982 1039 ntAPPRIS P1 TSL 3 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Mrpl55-202ENSMUST00000108784 729 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm13045-201ENSMUST00000119019 712 ntBASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm23699-201ENSMUST00000158835 135 ntBASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm20426-201ENSMUST00000173657 440 ntBASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm4310-201ENSMUST00000177847 889 ntBASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Trav13d-3-201ENSMUST00000179512 391 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Trav13n-3-201ENSMUST00000179580 337 ntAPPRIS P1 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm28375-201ENSMUST00000185304 430 ntTSL 3 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm43701-201ENSMUST00000202047 391 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Tmcc1-210ENSMUST00000204353 2851 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Wdr75-201ENSMUST00000027139 2953 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 B4galt4-201ENSMUST00000023482 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Cxcl12-203ENSMUST00000112871 3132 ntAPPRIS P4 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Caln1-202ENSMUST00000111287 2106 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Prkcd-205ENSMUST00000112207 2139 ntTSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Alg12-204ENSMUST00000162183 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Tnc-203ENSMUST00000107372 7106 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Dock6-207ENSMUST00000217336 6880 ntAPPRIS P2 TSL 5 BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Sept9-202ENSMUST00000093907 3616 ntAPPRIS ALT2 TSL 1 (best) BASIC10.75□□□□□ -0.69
Trim3Q9R1R2 Zfp398-201ENSMUST00000079881 2906 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Qsox1-201ENSMUST00000035325 3348 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Kcnk18-201ENSMUST00000065204 3032 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Trpv1-203ENSMUST00000108470 2667 ntTSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Fmnl1-202ENSMUST00000042286 3806 ntAPPRIS P4 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Col6a4-201ENSMUST00000121963 7371 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 C030034L19Rik-203ENSMUST00000181930 3133 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Kif2c-202ENSMUST00000106436 2378 ntAPPRIS ALT2 TSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Nnt-203ENSMUST00000109204 3198 ntTSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gpr161-201ENSMUST00000111450 6862 ntAPPRIS P3 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm37931-201ENSMUST00000194686 2866 ntBASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Tenm2-201ENSMUST00000057207 8298 ntAPPRIS ALT1 TSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 0610038B21Rik-201ENSMUST00000181420 1687 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Pla2g1b-202ENSMUST00000112071 361 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm13461-201ENSMUST00000120980 662 ntBASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm8199-201ENSMUST00000121323 823 ntBASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Zfp629-204ENSMUST00000128731 823 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 1700001G11Rik-203ENSMUST00000153646 764 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 1110038B12Rik-208ENSMUST00000174714 520 ntTSL 2 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Anapc16-202ENSMUST00000182116 581 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm9555-201ENSMUST00000200908 583 ntBASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC10.74□□□□□ -0.69
Trim3Q9R1R2 Gm32352-201ENSMUST00000212465 688 ntTSL 1 (best) BASIC10.74□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms