Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm43584-201ENSMUST00000199762 605 ntTSL 3 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Calca-205ENSMUST00000205933 458 ntTSL 3 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm17825-201ENSMUST00000206836 794 ntBASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 9430078K24Rik-201ENSMUST00000218818 1082 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Csrp2-203ENSMUST00000219502 544 ntTSL 3 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm11938-201ENSMUST00000072306 663 ntAPPRIS P1 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Mob3b-201ENSMUST00000102975 6030 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 D630008O14Rik-201ENSMUST00000144260 1568 ntTSL 2 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Ube2c-201ENSMUST00000001439 2191 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Hnrnpk-202ENSMUST00000116403 2970 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Serpina1b-202ENSMUST00000164454 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Sox9-201ENSMUST00000000579 4135 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Upf3bQ3ULL6 Als2-204ENSMUST00000163058 5379 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Cnga4-202ENSMUST00000210344 1977 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Mov10l1-203ENSMUST00000146993 4133 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Zfp687-201ENSMUST00000019482 4632 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 G6pdx-201ENSMUST00000004327 2652 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Lef1-201ENSMUST00000029611 3482 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gsdme-205ENSMUST00000170142 2133 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Dntt-201ENSMUST00000051806 2128 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Ints6l-207ENSMUST00000186445 3608 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Pabpc1-201ENSMUST00000001809 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Cstad-201ENSMUST00000102853 819 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm12419-201ENSMUST00000116649 636 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm11949-201ENSMUST00000117640 372 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm15985-201ENSMUST00000137731 343 ntTSL 3 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm16172-201ENSMUST00000156224 682 ntTSL 3 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Fhit-204ENSMUST00000161302 860 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Smyd1-205ENSMUST00000173297 947 ntTSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm20662-201ENSMUST00000176356 601 ntAPPRIS P5 TSL 3 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm8546-201ENSMUST00000178288 1264 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm10550-201ENSMUST00000188846 982 ntTSL 2 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm38114-201ENSMUST00000191877 1232 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm35549-201ENSMUST00000203176 735 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm45856-201ENSMUST00000212752 416 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 AC162938.2-204ENSMUST00000216455 984 ntTSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm4065-201ENSMUST00000218715 763 ntTSL 2 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 4930523C07Rik-202ENSMUST00000097513 300 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Trappc11-201ENSMUST00000039061 4332 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Chd5-201ENSMUST00000005175 9122 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm43127-201ENSMUST00000195890 2789 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 App-206ENSMUST00000227723 8167 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Gm9544-201ENSMUST00000223349 2482 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Hsd17b6-203ENSMUST00000219447 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Tbc1d14-204ENSMUST00000130417 2665 ntTSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Adam12-201ENSMUST00000067680 7675 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Dync1i2-208ENSMUST00000112144 2565 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Ttll10-206ENSMUST00000184348 2556 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Zfp862-ps-201ENSMUST00000203457 3282 ntBASIC12.19□□□□□ -0.46
Upf3bQ3ULL6 Amigo3-201ENSMUST00000085060 2543 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Bub3-203ENSMUST00000207442 3414 ntAPPRIS ALT1 TSL 3 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm13561-201ENSMUST00000136879 1826 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Ablim1-210ENSMUST00000111550 2731 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm28424-201ENSMUST00000187393 1319 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm45677-201ENSMUST00000209975 1341 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm15774-201ENSMUST00000141810 2176 ntTSL 5 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Cacna1c-205ENSMUST00000112825 7577 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Setx-201ENSMUST00000061578 10970 ntAPPRIS P1 TSL 5 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Lgals12-201ENSMUST00000079902 2590 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Tcf7l2-206ENSMUST00000111652 1041 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Cetn2-203ENSMUST00000114551 1286 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm14314-201ENSMUST00000118225 1015 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm15615-201ENSMUST00000118876 198 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 n-R5s14-201ENSMUST00000122688 107 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Gm14199-201ENSMUST00000130021 495 ntTSL 2 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 2610005L07Rik-201ENSMUST00000139264 948 ntBASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC12.18□□□□□ -0.46
Upf3bQ3ULL6 C730034F03Rik-201ENSMUST00000168646 1280 ntAPPRIS P1 BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 62.5 ms