Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Acvr1c-201ENSMUST00000028178 9162 ntAPPRIS P2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Shc1-201ENSMUST00000039110 3250 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Man2c1-215ENSMUST00000161182 2909 ntTSL 5 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Nudt15-201ENSMUST00000043813 3579 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Spg11-201ENSMUST00000036450 7671 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Ces1d-201ENSMUST00000034172 2004 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 D3Ertd751e-204ENSMUST00000119572 1011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Gng5-ps-201ENSMUST00000120931 205 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm20822-201ENSMUST00000165756 687 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm20828-201ENSMUST00000170889 687 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm23400-201ENSMUST00000174994 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm26463-201ENSMUST00000175065 101 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm24332-201ENSMUST00000175102 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25959-201ENSMUST00000175112 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm22475-201ENSMUST00000175169 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm22903-201ENSMUST00000175193 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25070-201ENSMUST00000175237 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm24159-201ENSMUST00000175264 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25299-201ENSMUST00000175283 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm23798-201ENSMUST00000175560 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm23802-201ENSMUST00000175565 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25708-201ENSMUST00000177687 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm24370-201ENSMUST00000178007 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm23049-201ENSMUST00000178068 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm28019-201ENSMUST00000178138 101 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25571-201ENSMUST00000178322 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25355-201ENSMUST00000178456 101 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm24975-201ENSMUST00000178492 101 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm23189-201ENSMUST00000178954 102 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm25100-201ENSMUST00000179750 101 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm23064-201ENSMUST00000179866 101 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm5599-201ENSMUST00000209602 788 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm8181-201ENSMUST00000062242 669 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Triml2-201ENSMUST00000163869 1467 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 AC160410.1-201ENSMUST00000219298 1972 ntBASIC12.63□□□□□ -0.39
Col6a1Q04857 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Palld-204ENSMUST00000121785 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Col6a1Q04857 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC12.63□□□□□ -0.39
Col6a1Q04857 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Meikin-201ENSMUST00000094193 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Cul9-204ENSMUST00000182485 7848 ntAPPRIS P2 TSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gsdmcl2-203ENSMUST00000185431 1911 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Mmel1-207ENSMUST00000163732 2935 ntAPPRIS P2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 5930430L01Rik-201ENSMUST00000145042 3994 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Tram1l1-201ENSMUST00000058994 3889 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Tpm1-201ENSMUST00000030185 1797 ntAPPRIS ALT1 TSL 2 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Lrriq1-203ENSMUST00000166240 5232 ntAPPRIS P1 TSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm23255-201ENSMUST00000102244 110 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Trav10d-201ENSMUST00000103646 406 ntAPPRIS P1 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Lemd1-201ENSMUST00000112357 964 ntAPPRIS P3 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Ntm-202ENSMUST00000115236 1072 ntTSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Rpsa-ps5-201ENSMUST00000121462 885 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm13981-201ENSMUST00000122360 447 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Mir1905-201ENSMUST00000122779 82 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Zfp961-203ENSMUST00000132848 781 ntTSL 5 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Pfdn5-203ENSMUST00000165671 830 ntTSL 2 BASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm28937-201ENSMUST00000185413 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm29400-201ENSMUST00000187208 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm28662-201ENSMUST00000188446 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm28251-201ENSMUST00000188835 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm37318-201ENSMUST00000194325 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm38017-201ENSMUST00000194768 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm37287-201ENSMUST00000195449 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm37793-201ENSMUST00000195548 695 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Gm42655-201ENSMUST00000202782 1134 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Cplx3-203ENSMUST00000217015 540 ntTSL 2 BASIC12.62□□□□□ -0.39
Col6a1Q04857 AC164618.2-201ENSMUST00000224770 573 ntBASIC12.62□□□□□ -0.39
Col6a1Q04857 Psca-201ENSMUST00000023265 860 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Ensa-202ENSMUST00000058230 1130 ntAPPRIS ALT1 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.62□□□□□ -0.39
Col6a1Q04857 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC12.62□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 42.2 ms