Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Gm5395-201ENSMUST00000121650 915 ntBASIC17.27■□□□□ 0.36
Cux1P53564 Gm26550-201ENSMUST00000180699 1184 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Gm7572-201ENSMUST00000182616 766 ntBASIC17.27■□□□□ 0.36
Cux1P53564 Adh6-ps1-202ENSMUST00000196293 754 ntBASIC17.27■□□□□ 0.36
Cux1P53564 Gm32786-201ENSMUST00000211351 628 ntTSL 3 BASIC17.27■□□□□ 0.36
Cux1P53564 AC174797.2-201ENSMUST00000225835 165 ntBASIC17.27■□□□□ 0.36
Cux1P53564 Psmb7-201ENSMUST00000028083 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Map3k11-201ENSMUST00000004156 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 AC154354.1-203ENSMUST00000225565 1364 ntBASIC17.27■□□□□ 0.36
Cux1P53564 Gm8271-201ENSMUST00000171053 1469 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Cux1P53564 Tekt2-202ENSMUST00000102616 1542 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Bet1-201ENSMUST00000049166 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Slc22a4-201ENSMUST00000020586 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Incenp-201ENSMUST00000025562 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Chpf2-202ENSMUST00000121863 3715 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Ptp4a3-202ENSMUST00000163582 3808 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Mrps35-201ENSMUST00000036111 4162 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Cux1P53564 Lrrc8a-201ENSMUST00000095078 4301 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Cux1P53564 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Cux1P53564 Ubap2l-215ENSMUST00000198322 3385 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Cux1P53564 Adamts17-202ENSMUST00000107478 6416 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cux1P53564 Traf3ip3-201ENSMUST00000043550 2122 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cux1P53564 Dedd-202ENSMUST00000097467 1606 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cux1P53564 Cttnbp2nl-202ENSMUST00000098763 4834 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cux1P53564 1110051M20Rik-202ENSMUST00000094835 1498 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Cux1P53564 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.35
Cux1P53564 Ifna9-201ENSMUST00000102807 573 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Cux1P53564 Gm12606-202ENSMUST00000129527 1184 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Smim6-201ENSMUST00000132961 978 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Hoxd3os1-203ENSMUST00000145799 511 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Ghrl-203ENSMUST00000203588 237 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 BC049987-201ENSMUST00000213859 918 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Esrp1-204ENSMUST00000108313 3696 ntTSL 5 BASIC17.26■□□□□ 0.35
Cux1P53564 Hoxa9-201ENSMUST00000048680 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 BC024139-202ENSMUST00000089654 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Il1rap-206ENSMUST00000174202 2306 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Srsf1-205ENSMUST00000139129 5362 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Fam160b2-201ENSMUST00000022690 4033 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cux1P53564 B4galnt2-201ENSMUST00000038343 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Camsap3-205ENSMUST00000207432 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Rab11fip2-202ENSMUST00000170819 1539 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cux1P53564 Serinc5-201ENSMUST00000049488 5366 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Ppp4r3b-201ENSMUST00000020755 5125 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Dck-201ENSMUST00000031311 3078 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Ltc4s-201ENSMUST00000101265 480 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 2610203C22Rik-201ENSMUST00000115480 1246 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Fthl17-ps2-201ENSMUST00000122268 528 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Gm25288-201ENSMUST00000122800 265 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Mir1941-201ENSMUST00000157834 83 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Gm5335-201ENSMUST00000182995 1000 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Mir6359-201ENSMUST00000183668 81 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Gm28671-201ENSMUST00000187036 692 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Gm42511-201ENSMUST00000196160 234 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Isca2-206ENSMUST00000222449 374 ntTSL 2 BASIC17.26■□□□□ 0.35
Cux1P53564 CT025603.1-201ENSMUST00000224040 448 ntBASIC17.26■□□□□ 0.35
Cux1P53564 AC154213.1-201ENSMUST00000228234 583 ntBASIC17.26■□□□□ 0.35
Cux1P53564 Zbtb7b-203ENSMUST00000107433 3650 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Smarca5-201ENSMUST00000043359 6113 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Wwp2-204ENSMUST00000212205 2758 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cux1P53564 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cux1P53564 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Dlg5-203ENSMUST00000090398 7851 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 6030458C11Rik-204ENSMUST00000228177 3156 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Gm16907-201ENSMUST00000180734 2317 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Rai2-201ENSMUST00000061514 2204 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Rwdd3-204ENSMUST00000106466 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Thoc6-202ENSMUST00000095579 1450 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Dpp6-204ENSMUST00000122171 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Trh-201ENSMUST00000006046 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Cpeb3-212ENSMUST00000154376 5671 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Traf7-201ENSMUST00000070777 2384 ntTSL 5 BASIC17.25■□□□□ 0.35
Cux1P53564 Fam222b-203ENSMUST00000155571 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Gm16209-201ENSMUST00000118457 627 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Gm10171-201ENSMUST00000126220 628 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC17.25■□□□□ 0.35
Cux1P53564 Gm5526-201ENSMUST00000153604 423 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Cd9-ps-201ENSMUST00000174687 650 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Gm27316-201ENSMUST00000184884 277 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC17.25■□□□□ 0.35
Cux1P53564 Gm6518-201ENSMUST00000208450 342 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Rab29-201ENSMUST00000027693 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Gm10233-201ENSMUST00000089275 628 ntBASIC17.25■□□□□ 0.35
Cux1P53564 Pde4c-201ENSMUST00000034307 3203 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Eif4g1-204ENSMUST00000115460 5638 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Cux1P53564 Lig1-210ENSMUST00000165964 3166 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cux1P53564 Gm28551-201ENSMUST00000144660 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Tacc1-202ENSMUST00000084512 6471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cux1P53564 Tsku-202ENSMUST00000164726 2620 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Cux1P53564 Ankrd13c-201ENSMUST00000040787 3903 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cux1P53564 Dnmt1-207ENSMUST00000216540 5543 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Evl-204ENSMUST00000172409 1955 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cux1P53564 Fktn-204ENSMUST00000221657 6241 ntTSL 5 BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 69.5 ms