Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Vmn1r8-201ENSMUST00000078186 1213 ntAPPRIS P1 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Gm5537-201ENSMUST00000091117 1252 ntBASIC9.17□□□□□ -0.94
Hoxd3P09027 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hoxd3P09027 Gm43061-201ENSMUST00000198850 2241 ntBASIC9.17□□□□□ -0.94
Hoxd3P09027 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hoxd3P09027 CT025678.1-201ENSMUST00000214795 2972 ntBASIC9.17□□□□□ -0.94
Hoxd3P09027 Fxr1-202ENSMUST00000167354 1986 ntTSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Tom1l2-202ENSMUST00000093046 4849 ntTSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hoxd3P09027 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC9.17□□□□□ -0.94
Hoxd3P09027 Zfp335-201ENSMUST00000041361 4587 ntAPPRIS P1 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hoxd3P09027 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC9.17□□□□□ -0.94
Hoxd3P09027 Gm43807-201ENSMUST00000200678 1781 ntBASIC9.17□□□□□ -0.94
Hoxd3P09027 Axin2-201ENSMUST00000052915 4260 ntAPPRIS P2 TSL 1 (best) BASIC9.17□□□□□ -0.94
Hoxd3P09027 Gm9929-201ENSMUST00000171747 1671 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm36235-201ENSMUST00000223158 1694 ntTSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 2810006K23Rik-201ENSMUST00000077376 1677 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Brinp2-201ENSMUST00000004133 4167 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Eps15l1-201ENSMUST00000163643 3129 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Lcmt2-202ENSMUST00000110674 3056 ntAPPRIS P1 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Aifm2-203ENSMUST00000099706 3086 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm20052-201ENSMUST00000200831 1525 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Slc27a2-201ENSMUST00000061491 2918 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Als2cl-203ENSMUST00000130386 5056 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Fbxo18-201ENSMUST00000071564 3567 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gap43-201ENSMUST00000102817 1420 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Madd-207ENSMUST00000111369 5582 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Aebp2-205ENSMUST00000160836 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Specc1-213ENSMUST00000202179 6676 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Col4a3-201ENSMUST00000113457 8554 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Lyrm1-202ENSMUST00000106516 1069 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Hemk1-202ENSMUST00000118051 453 ntTSL 3 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12616-201ENSMUST00000118594 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Ldha-ps2-201ENSMUST00000118722 1057 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12036-201ENSMUST00000120008 530 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Rab15-203ENSMUST00000121716 739 ntTSL 3 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Olfr1003-ps1-201ENSMUST00000122238 717 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Spata3-210ENSMUST00000153247 884 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm24241-201ENSMUST00000157787 145 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm25971-201ENSMUST00000158953 286 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm9550-201ENSMUST00000161130 862 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12624-201ENSMUST00000177615 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12621-201ENSMUST00000177760 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12615-201ENSMUST00000177970 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12622-201ENSMUST00000177975 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12627-201ENSMUST00000178412 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12625-201ENSMUST00000179122 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12614-201ENSMUST00000179586 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm12613-201ENSMUST00000180323 382 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm10774-201ENSMUST00000188689 204 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Platr10-202ENSMUST00000191479 818 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm44200-201ENSMUST00000204883 662 ntTSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm35060-201ENSMUST00000207669 825 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Lgals4-207ENSMUST00000208971 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm45781-201ENSMUST00000212860 539 ntTSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Gm18996-201ENSMUST00000214851 755 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 AC132237.2-201ENSMUST00000221702 1209 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 AC134860.1-201ENSMUST00000224867 660 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 AC154276.3-201ENSMUST00000227643 998 ntBASIC9.16□□□□□ -0.94
Hoxd3P09027 Psmg2-201ENSMUST00000025418 1059 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Hdac5-202ENSMUST00000107150 3759 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Madd-211ENSMUST00000111373 5641 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Trak1-213ENSMUST00000211439 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Espn-201ENSMUST00000030785 3406 ntAPPRIS P2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Grsf1-202ENSMUST00000113234 2286 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Oprm1-205ENSMUST00000078634 1695 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Arhgap20-204ENSMUST00000130405 3881 ntAPPRIS ALT2 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Olfml3-201ENSMUST00000029440 5465 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Acly-201ENSMUST00000007131 4393 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Fen1-203ENSMUST00000142241 2152 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Mroh5-202ENSMUST00000110021 2145 ntAPPRIS ALT2 TSL 1 (best) BASIC9.16□□□□□ -0.94
Hoxd3P09027 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC9.16□□□□□ -0.94
Hoxd3P09027 Tsku-203ENSMUST00000165257 2514 ntAPPRIS P1 TSL 2 BASIC9.15□□□□□ -0.94
Hoxd3P09027 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms