Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Asb15-201ENSMUST00000031696 2088 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.91
Hmgb3O54879 Gm7553-201ENSMUST00000185805 1426 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm26868-201ENSMUST00000181927 2655 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ncoa2-201ENSMUST00000006037 4897 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Abhd18-201ENSMUST00000108077 3277 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Dcaf4-201ENSMUST00000021645 2008 ntAPPRIS P2 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 2410089E03Rik-201ENSMUST00000110617 10469 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ccdc162-212ENSMUST00000219054 3182 ntTSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm37048-201ENSMUST00000194827 5578 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Stat5a-202ENSMUST00000107356 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Pcdhb2-201ENSMUST00000056522 2813 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Sptbn1-201ENSMUST00000006629 8461 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Snw1-201ENSMUST00000021428 2232 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Thoc5-201ENSMUST00000038237 2235 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Edil3-201ENSMUST00000043111 5156 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Slc6a20b-201ENSMUST00000026273 6307 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ap5z1-201ENSMUST00000038699 3689 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ybey-201ENSMUST00000049185 4522 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Nfe2l1-203ENSMUST00000107658 4219 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Arih2-201ENSMUST00000013338 3924 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Sipa1l1-205ENSMUST00000220963 5907 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Btbd7-206ENSMUST00000223554 8157 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Dclk1-201ENSMUST00000054237 7847 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Park7-202ENSMUST00000105673 919 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Mul1-203ENSMUST00000105815 473 ntTSL 3 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Rs1-202ENSMUST00000112368 731 ntTSL 3 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm12164-201ENSMUST00000121695 551 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm12348-201ENSMUST00000138915 313 ntTSL 3 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Dgcr6-203ENSMUST00000143343 1280 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Rxrg-201ENSMUST00000015987 2110 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm17028-201ENSMUST00000170026 704 ntTSL 3 BASIC9.39□□□□□ -0.91
Hmgb3O54879 4631405K08Rik-201ENSMUST00000180420 2112 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 2410004P03Rik-203ENSMUST00000190691 953 ntTSL 2 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm7561-201ENSMUST00000211203 886 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm19994-201ENSMUST00000217086 586 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 AC160029.2-201ENSMUST00000218285 548 ntTSL 3 BASIC9.39□□□□□ -0.91
Hmgb3O54879 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 AC166095.1-201ENSMUST00000223731 1241 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 St13-201ENSMUST00000023039 1089 ntTSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm9996-201ENSMUST00000070359 913 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm11559-201ENSMUST00000092694 1096 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ces2e-201ENSMUST00000034355 2699 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Il1rap-201ENSMUST00000023156 4520 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm21103-202ENSMUST00000170923 1761 ntAPPRIS P5 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Smarca1-202ENSMUST00000088973 4798 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm42641-202ENSMUST00000160217 4248 ntAPPRIS P5 TSL 2 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm45532-201ENSMUST00000210342 3620 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Ift88-201ENSMUST00000122063 3088 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Snapc1-201ENSMUST00000021532 6275 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Nrxn3-205ENSMUST00000163134 7922 ntAPPRIS P1 TSL 5 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Ank3-231ENSMUST00000182884 9963 ntAPPRIS P4 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Nup133-201ENSMUST00000044795 5808 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Cenpj-203ENSMUST00000225951 4756 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Gm9035-201ENSMUST00000218318 1697 ntBASIC9.39□□□□□ -0.91
Hmgb3O54879 Mirg-201ENSMUST00000181496 1906 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Fsd2-201ENSMUST00000042318 3985 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
Hmgb3O54879 Fam184b-201ENSMUST00000016023 4236 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Rab11fip4os1-201ENSMUST00000145652 2187 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
Hmgb3O54879 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Erc1-203ENSMUST00000183703 8760 ntAPPRIS P2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Lrrc8b-201ENSMUST00000112707 6726 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Sirpa-204ENSMUST00000103203 3674 ntAPPRIS P3 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm9866-203ENSMUST00000182592 8487 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Eif2ak4-206ENSMUST00000110874 5298 ntTSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Plekha7-207ENSMUST00000182511 4502 ntTSL 2 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Emc1-205ENSMUST00000179784 6232 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Camk2b-210ENSMUST00000109815 3780 ntAPPRIS P2 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Actg2-201ENSMUST00000075161 1333 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Arhgap19-201ENSMUST00000026150 5103 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Tpp2-201ENSMUST00000087933 4649 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Foxd2os-201ENSMUST00000123272 2908 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Klhl1-201ENSMUST00000022666 6645 ntAPPRIS P1 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Tle6-210ENSMUST00000142948 1961 ntAPPRIS ALT2 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Fgf8-203ENSMUST00000111924 630 ntTSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm12058-201ENSMUST00000118614 437 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm5419-201ENSMUST00000119301 527 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm4986-201ENSMUST00000119731 549 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm12315-201ENSMUST00000151599 911 ntTSL 3 BASIC9.38□□□□□ -0.91
Hmgb3O54879 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC9.38□□□□□ -0.91
Hmgb3O54879 Cox16-204ENSMUST00000166723 579 ntTSL 2 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm6114-201ENSMUST00000182472 968 ntBASIC9.38□□□□□ -0.91
Hmgb3O54879 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC9.38□□□□□ -0.91
Retrieved 100 of 76,532 protein–RNA pairs in 191.5 ms