Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Krtap10-10-201ENSMUST00000218843 1306 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 9230105E05Rik-201ENSMUST00000161291 2250 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Sirt5-201ENSMUST00000066804 1367 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Csf1r-202ENSMUST00000115268 4701 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Gm43242-201ENSMUST00000199507 1776 ntBASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Sell-201ENSMUST00000027871 2199 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Tat-201ENSMUST00000001720 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Rasgrp4-208ENSMUST00000161522 3242 ntTSL 5 BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Smarca2-209ENSMUST00000176030 5862 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Zfp280d-205ENSMUST00000183468 1834 ntTSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Rad9b-201ENSMUST00000049009 1631 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Tax1bp1-201ENSMUST00000080723 3285 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.68
Trim3Q9R1R2 Prf1-202ENSMUST00000219375 2474 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 AC154314.2-201ENSMUST00000223677 3502 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Metap2-208ENSMUST00000181091 1876 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 AC153506.1-201ENSMUST00000218768 2915 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Luc7l-201ENSMUST00000025023 1686 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Nefl-201ENSMUST00000022639 3380 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Coq8a-201ENSMUST00000027766 4026 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm24891-201ENSMUST00000104391 136 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Ifitm10-203ENSMUST00000105988 824 ntAPPRIS P4 TSL 2 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm9062-201ENSMUST00000117712 727 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm11663-201ENSMUST00000117888 290 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm6335-201ENSMUST00000118081 1194 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm6506-201ENSMUST00000119775 1136 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm7816-201ENSMUST00000119884 1194 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm15542-201ENSMUST00000121585 1194 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm11985-201ENSMUST00000122910 1007 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 4930515B02Rik-201ENSMUST00000140588 591 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm42682-201ENSMUST00000198349 1265 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Net1-206ENSMUST00000222504 447 ntTSL 3 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 B230303A05Rik-204ENSMUST00000223006 748 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Spcs1-203ENSMUST00000226374 592 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Prop1-201ENSMUST00000051159 1133 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Gm10288-201ENSMUST00000084614 537 ntBASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Csgalnact1-203ENSMUST00000130214 3029 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Tcf7l2-207ENSMUST00000111653 2629 ntAPPRIS ALT2 TSL 2 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Dtx3l-202ENSMUST00000114885 2648 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Stxbp5l-204ENSMUST00000114781 3544 ntAPPRIS ALT2 TSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Capn15-201ENSMUST00000041641 3520 ntAPPRIS P3 TSL 5 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Cit-201ENSMUST00000051704 9514 ntAPPRIS P2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Pex26-202ENSMUST00000118234 3778 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Myocd-203ENSMUST00000108695 5114 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Fdxacb1-201ENSMUST00000042391 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Mospd2-203ENSMUST00000112248 2487 ntTSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.69
Trim3Q9R1R2 Foxp1-221ENSMUST00000176632 2336 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Foxp1-222ENSMUST00000176850 2339 ntAPPRIS ALT1 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Prpf40b-208ENSMUST00000136980 3047 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Calm1-201ENSMUST00000001204 3987 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Emc1-201ENSMUST00000042096 4706 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Spata48-201ENSMUST00000020410 1430 ntAPPRIS ALT2 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 AC125374.1-201ENSMUST00000213573 1400 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Tapbpl-201ENSMUST00000043422 2352 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 4632404M16Rik-201ENSMUST00000197326 2882 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Pif1-203ENSMUST00000134538 3395 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Atp1a3-201ENSMUST00000080882 3621 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm38115-201ENSMUST00000194317 2413 ntTSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Usp44-201ENSMUST00000095333 2946 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm20427-201ENSMUST00000168978 3703 ntTSL 2 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Vps54-202ENSMUST00000109578 4273 ntAPPRIS ALT2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Fam49a-201ENSMUST00000069005 1771 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Mir680-2-201ENSMUST00000102163 110 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm23251-201ENSMUST00000103773 110 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm11331-201ENSMUST00000119764 288 ntBASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Omt2a-203ENSMUST00000166056 1167 ntAPPRIS P4 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Sap25-201ENSMUST00000166099 1101 ntAPPRIS P2 TSL 1 (best) BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Spaca6-209ENSMUST00000172097 1073 ntAPPRIS P1 TSL 5 BASIC10.76□□□□□ -0.69
Trim3Q9R1R2 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC10.76□□□□□ -0.69
Retrieved 100 of 76,532 protein–RNA pairs in 49.3 ms