Protein–RNA interactions for Protein: Q9JKE2

Trem1, Triggering receptor expressed on myeloid cells 1, mousemouse

Predictions only

Length 230 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem1Q9JKE2 4631405J19Rik-202ENSMUST00000111270 2909 ntTSL 2 BASIC10.19□□□□□ -0.78
Trem1Q9JKE2 Olfr126-203ENSMUST00000217487 1859 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
Trem1Q9JKE2 Gm4784-201ENSMUST00000117365 1824 ntBASIC10.19□□□□□ -0.78
Trem1Q9JKE2 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trem1Q9JKE2 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trem1Q9JKE2 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trem1Q9JKE2 Gtf2f1-201ENSMUST00000002733 1717 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Trem1Q9JKE2 Sun1-204ENSMUST00000110882 2454 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 P4ha1-201ENSMUST00000009789 4043 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Hsd3b6-202ENSMUST00000170847 1539 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm37827-201ENSMUST00000194486 1542 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Raf1-202ENSMUST00000112949 2946 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Rprd1b-203ENSMUST00000109518 4399 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Zfp60-208ENSMUST00000167955 2115 ntAPPRIS P1 TSL 2 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Zfp384-203ENSMUST00000084275 2829 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm45342-201ENSMUST00000210903 1363 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Ccdc136-209ENSMUST00000181464 3444 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Btn1a1-201ENSMUST00000041674 3423 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Zfp114-201ENSMUST00000086010 3332 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Stx4a-202ENSMUST00000121705 1316 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Hnrnpk-216ENSMUST00000177019 2626 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm45797-201ENSMUST00000212759 1921 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Oc90-201ENSMUST00000060522 1909 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Bud23-203ENSMUST00000111205 1169 ntAPPRIS ALT2 TSL 3 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Olfr239-201ENSMUST00000112165 948 ntAPPRIS P1 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm9083-201ENSMUST00000120423 819 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 4732440D04Rik-202ENSMUST00000159618 413 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm27701-201ENSMUST00000184498 110 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm43002-201ENSMUST00000200310 155 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Mrto4-ps1-201ENSMUST00000220565 721 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 1700127F24Rik-201ENSMUST00000221685 604 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 AC150560.1-201ENSMUST00000227731 1187 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Spsb2-201ENSMUST00000047760 1213 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gng8-201ENSMUST00000078182 910 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Itsn1-204ENSMUST00000113993 3787 ntTSL 5 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Mro-202ENSMUST00000120033 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Ido2-201ENSMUST00000121992 2452 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 AC153370.2-201ENSMUST00000217920 3093 ntTSL 5 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Tox4-201ENSMUST00000022766 5350 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Lin52-201ENSMUST00000137170 2270 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Osbpl5-201ENSMUST00000020411 3994 ntAPPRIS P3 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm16478-201ENSMUST00000208113 5084 ntBASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Gm26614-201ENSMUST00000180386 3909 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Exosc2-201ENSMUST00000038474 1686 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Cyp2a12-201ENSMUST00000075552 1681 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Pmel-201ENSMUST00000054125 2130 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Ddx3x-201ENSMUST00000000804 4692 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Ap1m2-202ENSMUST00000115433 2586 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Pi4ka-211ENSMUST00000154364 6630 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
Trem1Q9JKE2 Nos1ap-203ENSMUST00000160466 1533 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Cipc-211ENSMUST00000191463 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Togaram1-201ENSMUST00000066296 6372 ntAPPRIS P2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Trim26-202ENSMUST00000123715 1406 ntTSL 5 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Yeats2-202ENSMUST00000115560 6116 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Habp2-201ENSMUST00000078284 2314 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Tmem80-204ENSMUST00000128906 1387 ntTSL 2 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm44445-201ENSMUST00000204075 2683 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Them4-201ENSMUST00000049822 1781 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Nexmif-203ENSMUST00000118314 11476 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Kif3a-202ENSMUST00000118353 2178 ntTSL 5 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Ptbp3-202ENSMUST00000102883 3409 ntAPPRIS P4 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Trappc6a-202ENSMUST00000108455 651 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm13315-201ENSMUST00000120376 991 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm11630-201ENSMUST00000152825 382 ntTSL 2 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm18304-201ENSMUST00000189162 546 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm42722-201ENSMUST00000198855 940 ntTSL 3 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm4768-201ENSMUST00000206199 686 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm18164-201ENSMUST00000213769 927 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm18166-201ENSMUST00000215557 927 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 AC108416.1-202ENSMUST00000228927 1201 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Upk2-201ENSMUST00000047740 1083 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Tmem107-201ENSMUST00000075980 779 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm38357-201ENSMUST00000195382 2464 ntBASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm45234-201ENSMUST00000129411 4359 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
Trem1Q9JKE2 Gm26541-201ENSMUST00000181866 3973 ntTSL 5 BASIC10.17□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 57.3 ms