Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
Sh3rf1Q69ZI1 Dhdds-201ENSMUST00000012262 3133 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sh3rf1Q69ZI1 Speg-201ENSMUST00000087122 10801 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sh3rf1Q69ZI1 Tmem8b-209ENSMUST00000167153 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sh3rf1Q69ZI1 Il27ra-201ENSMUST00000005601 2664 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
Sh3rf1Q69ZI1 Rps6ka1-209ENSMUST00000174481 2228 ntTSL 5 BASIC11.62□□□□□ -0.55
Sh3rf1Q69ZI1 Arc-202ENSMUST00000110009 3054 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Arc-201ENSMUST00000023268 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Tlr12-201ENSMUST00000074829 3177 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Stk38-201ENSMUST00000009138 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Lysmd4-202ENSMUST00000179106 3319 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Zfp518b-203ENSMUST00000179555 6816 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Banp-204ENSMUST00000170857 5444 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Il15ra-204ENSMUST00000114832 468 ntTSL 5 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Got2-ps1-201ENSMUST00000121655 1293 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Snrpa-206ENSMUST00000163311 1288 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm19353-201ENSMUST00000184561 445 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm7467-201ENSMUST00000185173 652 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Mir124-2hg-207ENSMUST00000189868 535 ntTSL 2 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 4833445I07Rik-202ENSMUST00000194104 579 ntTSL 3 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm44126-201ENSMUST00000204831 514 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Zfp36l1-203ENSMUST00000218835 292 ntTSL 3 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Il1f10-201ENSMUST00000058056 538 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Sftpd-201ENSMUST00000077136 1275 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Pip4k2b-201ENSMUST00000018691 5053 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Inpp5j-201ENSMUST00000044507 3370 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Dnmt3l-202ENSMUST00000123940 1452 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm5847-201ENSMUST00000178959 1595 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gm43860-201ENSMUST00000201742 2705 ntBASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Epb41l1-203ENSMUST00000103136 6249 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Hr-205ENSMUST00000163060 5278 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Scaf1-206ENSMUST00000211735 4209 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Nono-201ENSMUST00000033673 2562 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Dusp10-201ENSMUST00000048655 2792 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Sh3rf1Q69ZI1 Ikbkb-202ENSMUST00000063401 3977 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Pmp2-201ENSMUST00000029034 1408 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Frg2f1-201ENSMUST00000079611 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm35850-202ENSMUST00000211705 2120 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 9430015G10Rik-201ENSMUST00000072554 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Hars2-206ENSMUST00000152954 3336 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Pspc1-201ENSMUST00000022507 4114 ntAPPRIS P2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Pkp4-201ENSMUST00000037903 4378 ntTSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 1110051M20Rik-201ENSMUST00000064652 2896 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Duox2-201ENSMUST00000053734 5744 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Acrbp-202ENSMUST00000088294 1883 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Cyb5b-201ENSMUST00000034400 4316 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Mthfsd-210ENSMUST00000139782 1366 ntTSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Ddx11-201ENSMUST00000163605 4149 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm13035-201ENSMUST00000117496 342 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm12501-201ENSMUST00000119163 529 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm11960-201ENSMUST00000122068 925 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm16275-201ENSMUST00000147774 712 ntTSL 3 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm38314-201ENSMUST00000195709 625 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm18038-201ENSMUST00000197900 485 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 4930569F06Rik-201ENSMUST00000036821 433 ntBASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Olfr981-201ENSMUST00000059859 997 ntAPPRIS P1 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Haus6-201ENSMUST00000070607 6158 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Kif19a-201ENSMUST00000084368 3433 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
Sh3rf1Q69ZI1 Prr12-201ENSMUST00000057293 7023 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
Retrieved 100 of 76,532 protein–RNA pairs in 45.9 ms