Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gtf3c1-201ENSMUST00000055506 6961 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Adgrl3-210ENSMUST00000119788 5394 ntAPPRIS ALT2 TSL 5 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Ung-203ENSMUST00000112275 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Serpinb12-202ENSMUST00000112724 1623 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Bahcc1-201ENSMUST00000044985 10726 ntAPPRIS P3 TSL 5 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Olfm4-201ENSMUST00000088735 1640 ntTSL 2 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Agrn-202ENSMUST00000105574 7193 ntTSL 5 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Meaf6-205ENSMUST00000154689 4550 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Gm43447-201ENSMUST00000198471 1535 ntBASIC9.81□□□□□ -0.84
Col8a1Q00780 Gm36864-203ENSMUST00000223070 1513 ntAPPRIS P5 TSL 5 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Gm4755-201ENSMUST00000181803 2647 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 9430015G10Rik-202ENSMUST00000105576 1329 ntTSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Catsper3-201ENSMUST00000021961 1330 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Gm10578-202ENSMUST00000211070 2876 ntTSL 2 BASIC9.81□□□□□ -0.84
Col8a1Q00780 Alpi-201ENSMUST00000113270 2337 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Mapk8ip3-204ENSMUST00000117509 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Bach1-201ENSMUST00000026703 5867 ntAPPRIS P1 TSL 1 (best) BASIC9.81□□□□□ -0.84
Col8a1Q00780 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Ighg1-202ENSMUST00000194304 2482 ntAPPRIS P5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Tsga10-202ENSMUST00000088072 3837 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Cldn15-202ENSMUST00000111093 1902 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 AC166574.4-201ENSMUST00000227165 1937 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 C1qtnf9-201ENSMUST00000025940 1903 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Slit2-216ENSMUST00000174313 7734 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Ppp1r18-203ENSMUST00000127442 3524 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Nelfcd-201ENSMUST00000016397 2280 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm42840-201ENSMUST00000200303 2251 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Tex2-201ENSMUST00000042780 4934 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Mfap3l-203ENSMUST00000161421 4142 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Hdac6-201ENSMUST00000033501 4142 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Pbrm1-208ENSMUST00000112098 6566 ntTSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Tnnt3-214ENSMUST00000105953 1049 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Hist1h2bk-201ENSMUST00000110455 476 ntAPPRIS P1 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Tprkb-204ENSMUST00000113752 749 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm13422-201ENSMUST00000118834 504 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm9673-201ENSMUST00000119287 781 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Kdm6bos-201ENSMUST00000129924 840 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Hmgn2-208ENSMUST00000136327 772 ntTSL 2 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm15911-201ENSMUST00000138992 809 ntTSL 3 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm25554-201ENSMUST00000158075 113 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm16030-201ENSMUST00000159098 603 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Rps19-ps10-201ENSMUST00000159750 435 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm3329-201ENSMUST00000159873 556 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm16938-201ENSMUST00000180517 464 ntTSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Pdcd5-ps-201ENSMUST00000191699 381 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm37197-201ENSMUST00000195607 401 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm43547-201ENSMUST00000197729 328 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm45682-201ENSMUST00000209434 1256 ntTSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm9204-201ENSMUST00000212641 947 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm39317-201ENSMUST00000213360 1138 ntTSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm7940-201ENSMUST00000218195 769 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 AC153152.3-201ENSMUST00000222188 1135 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Cma1-202ENSMUST00000226280 1090 ntAPPRIS ALT2 BASIC9.8□□□□□ -0.84
Col8a1Q00780 AC142266.1-201ENSMUST00000228107 415 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Cma1-201ENSMUST00000022834 1074 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Fkbpl-201ENSMUST00000036720 1270 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Mob3a-201ENSMUST00000003438 2682 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Adora1-203ENSMUST00000169927 4581 ntAPPRIS P1 TSL 5 BASIC9.8□□□□□ -0.84
Col8a1Q00780 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Pcdhga4-201ENSMUST00000194418 4727 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Fgf12-201ENSMUST00000100024 3065 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm37348-201ENSMUST00000193104 1789 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Fbxo15-201ENSMUST00000037718 1437 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Cog3-203ENSMUST00000227473 4197 ntBASIC9.8□□□□□ -0.84
Col8a1Q00780 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Fzd6-201ENSMUST00000022906 4081 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Ccdc30-202ENSMUST00000063642 2534 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Chst4-201ENSMUST00000109222 1942 ntAPPRIS P2 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Lrp12-201ENSMUST00000022916 4109 ntAPPRIS P1 TSL 1 (best) BASIC9.8□□□□□ -0.84
Col8a1Q00780 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC9.79□□□□□ -0.84
Col8a1Q00780 Egfem1-202ENSMUST00000119598 2687 ntAPPRIS P4 TSL 1 (best) BASIC9.79□□□□□ -0.84
Col8a1Q00780 Coq3-201ENSMUST00000029909 2651 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Col8a1Q00780 Gm5780-201ENSMUST00000217774 1834 ntBASIC9.79□□□□□ -0.84
Col8a1Q00780 Zbtb42-203ENSMUST00000174780 3160 ntTSL 2 BASIC9.79□□□□□ -0.84
Col8a1Q00780 Gm37391-201ENSMUST00000194891 2318 ntBASIC9.79□□□□□ -0.84
Col8a1Q00780 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC9.79□□□□□ -0.84
Col8a1Q00780 Dnmt3a-218ENSMUST00000174817 8737 ntAPPRIS ALT2 TSL 1 (best) BASIC9.79□□□□□ -0.84
Col8a1Q00780 Platr19-201ENSMUST00000171380 1466 ntTSL 1 (best) BASIC9.79□□□□□ -0.84
Col8a1Q00780 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC9.79□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 46.7 ms