Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Fam120b-201ENSMUST00000055352 4518 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Spatc1l-201ENSMUST00000009259 1332 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Gm3716-202ENSMUST00000198582 2879 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 Slc25a51-202ENSMUST00000116341 4438 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
RaraP11416 BC034090-201ENSMUST00000035914 3797 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Ptbp1-202ENSMUST00000095457 2598 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Extl3-201ENSMUST00000022550 5977 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Gm42463-201ENSMUST00000198041 4886 ntBASIC12.35□□□□□ -0.43
RaraP11416 Crcp-201ENSMUST00000026608 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Nox4-201ENSMUST00000032781 3753 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Akr1c6-201ENSMUST00000021630 1396 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Maml2-202ENSMUST00000159294 6404 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Synpr-201ENSMUST00000070323 2541 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Srebf1-201ENSMUST00000020846 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Tmod4-202ENSMUST00000107227 1260 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Pafah1b3-202ENSMUST00000108410 689 ntTSL 3 BASIC12.35□□□□□ -0.43
RaraP11416 Pqbp1-203ENSMUST00000115655 1148 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Gm17193-201ENSMUST00000116345 691 ntTSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Gm14130-201ENSMUST00000118417 987 ntBASIC12.35□□□□□ -0.43
RaraP11416 Gm6039-201ENSMUST00000121667 1250 ntBASIC12.35□□□□□ -0.43
RaraP11416 Gm8815-201ENSMUST00000173809 620 ntBASIC12.35□□□□□ -0.43
RaraP11416 Ager-207ENSMUST00000173992 1248 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Cyb561-206ENSMUST00000184086 1130 ntTSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC12.35□□□□□ -0.43
RaraP11416 AC160929.1-201ENSMUST00000221247 415 ntBASIC12.35□□□□□ -0.43
RaraP11416 Zfp384-205ENSMUST00000112424 2673 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Ighg2b-202ENSMUST00000192188 2566 ntAPPRIS P5 BASIC12.35□□□□□ -0.43
RaraP11416 Thbs4-201ENSMUST00000022213 3198 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Odf2-209ENSMUST00000113764 2450 ntAPPRIS P3 TSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Tmc5-202ENSMUST00000098088 3774 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
RaraP11416 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Gmppb-202ENSMUST00000112295 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Sord-201ENSMUST00000110551 2352 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Rpap2-202ENSMUST00000112650 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Itgb2-201ENSMUST00000000299 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Pigb-206ENSMUST00000184035 3221 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
RaraP11416 Pla2g6-203ENSMUST00000172403 2943 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Tab1-201ENSMUST00000023050 2931 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 March1-207ENSMUST00000110258 2581 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Paqr8-203ENSMUST00000187651 1463 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Rab3gap2-204ENSMUST00000194740 4418 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Jhy-201ENSMUST00000034521 3074 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Cdc37-201ENSMUST00000019615 7851 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Esr2-205ENSMUST00000218621 3342 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Ndrg4-203ENSMUST00000080666 2738 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Gpr26-201ENSMUST00000045840 11571 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Olfr279-203ENSMUST00000216822 5605 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Ptprr-206ENSMUST00000148731 2511 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Gm20498-203ENSMUST00000166664 2284 ntAPPRIS P1 TSL 2 BASIC12.34□□□□□ -0.43
RaraP11416 Entpd8-201ENSMUST00000044078 2299 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Ncstn-201ENSMUST00000003550 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Vps18-201ENSMUST00000037280 4054 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC12.34□□□□□ -0.43
RaraP11416 Gm13899-201ENSMUST00000121519 1255 ntBASIC12.34□□□□□ -0.43
RaraP11416 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.34□□□□□ -0.43
RaraP11416 9430093N23Rik-201ENSMUST00000152494 515 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC12.34□□□□□ -0.43
RaraP11416 Gm26047-201ENSMUST00000157308 113 ntBASIC12.34□□□□□ -0.43
RaraP11416 Rps19-ps9-201ENSMUST00000161787 414 ntBASIC12.34□□□□□ -0.43
RaraP11416 Gm26047-202ENSMUST00000198840 115 ntBASIC12.34□□□□□ -0.43
RaraP11416 AC141438.2-201ENSMUST00000215068 271 ntBASIC12.34□□□□□ -0.43
RaraP11416 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Blvrb-201ENSMUST00000037399 1028 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 9430041J12Rik-201ENSMUST00000050989 534 ntBASIC12.34□□□□□ -0.43
RaraP11416 Cbx3-ps1-201ENSMUST00000091539 545 ntBASIC12.34□□□□□ -0.43
RaraP11416 Rhbdf2-202ENSMUST00000103029 3593 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Crybg2-201ENSMUST00000121391 4761 ntAPPRIS P2 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Ttll1-201ENSMUST00000016897 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Dmbt1-201ENSMUST00000084509 6243 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Gm15513-201ENSMUST00000140646 1569 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Megf11-202ENSMUST00000093829 3652 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Src-204ENSMUST00000109531 3586 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Slc43a1-204ENSMUST00000121114 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
RaraP11416 Nfx1-202ENSMUST00000091614 3617 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
RaraP11416 Snai2-201ENSMUST00000023356 2031 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
RaraP11416 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.43
RaraP11416 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 AC109214.1-201ENSMUST00000219520 1372 ntBASIC12.33□□□□□ -0.44
RaraP11416 Igsf3-202ENSMUST00000195164 3876 ntAPPRIS ALT2 TSL 5 BASIC12.33□□□□□ -0.44
RaraP11416 Cpne9-201ENSMUST00000041203 2777 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RaraP11416 Gm14005-209ENSMUST00000224993 1832 ntBASIC12.33□□□□□ -0.44
RaraP11416 Dnajc5-203ENSMUST00000108797 3664 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Ypel3-202ENSMUST00000106356 785 ntAPPRIS P1 TSL 5 BASIC12.33□□□□□ -0.44
RaraP11416 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC12.33□□□□□ -0.44
RaraP11416 Naa60-207ENSMUST00000150655 1166 ntAPPRIS P1 TSL 2 BASIC12.33□□□□□ -0.44
RaraP11416 Tbata-210ENSMUST00000151886 915 ntTSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC12.33□□□□□ -0.44
RaraP11416 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC12.33□□□□□ -0.44
RaraP11416 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
RaraP11416 Cacng1-201ENSMUST00000021065 1249 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.44
Retrieved 100 of 76,532 protein–RNA pairs in 65 ms