Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Hyal1-202ENSMUST00000112387 2706 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm13553-201ENSMUST00000133025 1970 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Wdcp-202ENSMUST00000085793 1992 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Lnx2-201ENSMUST00000016664 4557 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Mybpc3-202ENSMUST00000137942 4134 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Cacna1c-219ENSMUST00000189389 6603 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm21986-201ENSMUST00000113671 5560 ntTSL 2 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Kalrn-206ENSMUST00000114954 4677 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Tpst1-202ENSMUST00000118993 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Cfap74-209ENSMUST00000151083 5487 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Zfp609-201ENSMUST00000159109 7777 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Ikbkg-205ENSMUST00000114129 2222 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Ighv2-6-8-201ENSMUST00000103455 342 ntAPPRIS ALT2 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Cdk2ap1-204ENSMUST00000111474 1286 ntAPPRIS ALT1 TSL 2 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Rpl35a-204ENSMUST00000115078 500 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm11700-201ENSMUST00000119409 403 ntBASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Mrps17-207ENSMUST00000121813 868 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Nrg4-204ENSMUST00000130158 1000 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 D630008O14Rik-202ENSMUST00000149909 1043 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 5430405H02Rik-202ENSMUST00000176134 1196 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm6114-201ENSMUST00000182472 968 ntBASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm5732-201ENSMUST00000182596 1007 ntBASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm5733-201ENSMUST00000190232 939 ntBASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gm43378-201ENSMUST00000199336 582 ntBASIC10.79□□□□□ -0.68
Trim3Q9R1R2 AC151275.1-201ENSMUST00000224870 585 ntBASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Rnf20-210ENSMUST00000167496 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Nop14-201ENSMUST00000041364 2702 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Gfra1-209ENSMUST00000169850 3224 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Ppil2-203ENSMUST00000115721 3088 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Rims1-203ENSMUST00000097809 6179 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 A930038B10Rik-202ENSMUST00000181044 3415 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Myo1b-201ENSMUST00000018561 4767 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Pom121l2-201ENSMUST00000017126 2960 ntAPPRIS P4 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Dpep2-206ENSMUST00000227363 1844 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Igsf1-204ENSMUST00000114893 2671 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Rab27b-201ENSMUST00000069749 2671 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Unc79-202ENSMUST00000101099 8874 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Hyal3-202ENSMUST00000148440 1380 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm37600-201ENSMUST00000193764 3292 ntBASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Piezo2-202ENSMUST00000047480 10724 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 C230024C17Rik-201ENSMUST00000190663 3337 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Cyp2c53-ps-203ENSMUST00000176493 1443 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 4930453L07Rik-201ENSMUST00000209053 1439 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Dclk2-202ENSMUST00000191752 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Hhipl2-201ENSMUST00000065900 2525 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Cyp2d34-201ENSMUST00000109515 1622 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Astn1-211ENSMUST00000195311 3642 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Morc3-206ENSMUST00000202261 4175 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Morc3-201ENSMUST00000044068 4178 ntAPPRIS P1 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Hbs1l-209ENSMUST00000219915 2733 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm7851-201ENSMUST00000117574 323 ntBASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm11960-201ENSMUST00000122068 925 ntBASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm15722-201ENSMUST00000159271 661 ntTSL 3 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Ssty2-201ENSMUST00000179136 684 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm29087-201ENSMUST00000186462 645 ntTSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm28686-201ENSMUST00000187404 609 ntBASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Ssty2-202ENSMUST00000190565 1216 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm29264-201ENSMUST00000191240 1264 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm38228-201ENSMUST00000193169 1293 ntBASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Nkg7-203ENSMUST00000206741 686 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm7207-201ENSMUST00000211575 1067 ntBASIC10.78□□□□□ -0.68
Trim3Q9R1R2 1700008C04Rik-201ENSMUST00000218606 797 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Lcn8-201ENSMUST00000038482 651 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 1110025L11Rik-201ENSMUST00000089104 591 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gtf2ird2-201ENSMUST00000016086 3482 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Tfr2-206ENSMUST00000198783 2973 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Il6st-201ENSMUST00000070731 5207 ntAPPRIS P2 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Trim3Q9R1R2 Gm16364-201ENSMUST00000153722 1313 ntTSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms