Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gsdma2-201ENSMUST00000017355 1314 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Nrros-202ENSMUST00000115163 3559 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Brd3-201ENSMUST00000028282 5419 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Pias2-203ENSMUST00000168882 4984 ntAPPRIS P4 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Gm18719-201ENSMUST00000196696 1413 ntBASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Sec22b-201ENSMUST00000029476 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Synpo2l-202ENSMUST00000117386 3979 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Mamld1-202ENSMUST00000114629 3346 ntAPPRIS ALT2 TSL 5 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Cdk2ap1-202ENSMUST00000111472 648 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Myl2-203ENSMUST00000111751 889 ntAPPRIS P1 TSL 3 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Rab15-202ENSMUST00000118604 778 ntTSL 3 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Gm14396-201ENSMUST00000126966 548 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 A330048O09Rik-201ENSMUST00000180777 672 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Gm37629-201ENSMUST00000193635 1050 ntBASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Gm37466-201ENSMUST00000195692 652 ntBASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Abhd4-208ENSMUST00000199338 868 ntTSL 3 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Gm6905-201ENSMUST00000205729 511 ntBASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Spata24-201ENSMUST00000025209 701 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Rassf8-202ENSMUST00000058538 1131 ntBASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Krtap19-1-201ENSMUST00000081334 493 ntAPPRIS P1 BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Spata24-202ENSMUST00000096573 709 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Gm17540-201ENSMUST00000181617 1528 ntTSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Foxn2-201ENSMUST00000112238 5085 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Nhlh2-201ENSMUST00000066187 3761 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Dzip1l-201ENSMUST00000078367 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Kirrel3-209ENSMUST00000190549 3074 ntAPPRIS ALT2 TSL 1 (best) BASIC12.65□□□□□ -0.38
Prpf40aQ9R1C7 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.65□□□□□ -0.39
Prpf40aQ9R1C7 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC12.65□□□□□ -0.39
Prpf40aQ9R1C7 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC12.65□□□□□ -0.39
Prpf40aQ9R1C7 Gm45657-201ENSMUST00000211318 1349 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Asb7-202ENSMUST00000124899 4928 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Kcnj5-201ENSMUST00000034533 4685 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Kcnma1-212ENSMUST00000188285 4440 ntAPPRIS P4 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Smtn-202ENSMUST00000020721 3335 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Zfp608-201ENSMUST00000064763 6112 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Nexmif-202ENSMUST00000087879 10891 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 1110059E24Rik-201ENSMUST00000038830 1614 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Gm7851-201ENSMUST00000117574 323 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Gm11783-201ENSMUST00000119549 885 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Kcnmb4os1-201ENSMUST00000134586 824 ntTSL 2 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Mir8093-201ENSMUST00000185043 137 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 AC079680.1-201ENSMUST00000218730 649 ntTSL 5 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Lect2-202ENSMUST00000225183 823 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Cox6a2-201ENSMUST00000033049 680 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Lect2-201ENSMUST00000062806 837 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Mir219a-1-201ENSMUST00000083621 110 ntBASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Fam110b-201ENSMUST00000054857 3210 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Got1l1-201ENSMUST00000038174 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Ccpg1-206ENSMUST00000140675 2839 ntAPPRIS ALT2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Larp7-201ENSMUST00000029588 2121 ntAPPRIS P1 TSL 5 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Nop16-201ENSMUST00000026987 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.64□□□□□ -0.39
Prpf40aQ9R1C7 Hnrnph2-205ENSMUST00000113203 2315 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Zfp41-204ENSMUST00000161785 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Traf7-202ENSMUST00000088464 2504 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Gm45199-201ENSMUST00000207640 1507 ntBASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Slc26a2-202ENSMUST00000146409 7814 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 D130017N08Rik-203ENSMUST00000196629 2265 ntBASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Nod1-201ENSMUST00000060655 4315 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Myh1-201ENSMUST00000018637 5938 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Coch-201ENSMUST00000085412 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Snap29-201ENSMUST00000023449 3429 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Gm13461-201ENSMUST00000120980 662 ntBASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Gm8199-201ENSMUST00000121323 823 ntBASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC12.63□□□□□ -0.39
Prpf40aQ9R1C7 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC12.63□□□□□ -0.39
Retrieved 100 of 76,532 protein–RNA pairs in 72.2 ms