Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm42499-201ENSMUST00000196193 1412 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Dab2ip-202ENSMUST00000091010 6455 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Rab3d-203ENSMUST00000122211 3886 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Bglap3-203ENSMUST00000107543 1047 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Ppt1-204ENSMUST00000121870 986 ntTSL 2 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm15498-201ENSMUST00000126693 723 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm15506-201ENSMUST00000148776 1133 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm22388-201ENSMUST00000158194 248 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm9574-201ENSMUST00000173127 845 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm24328-201ENSMUST00000175104 67 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Tcstv1-202ENSMUST00000190512 875 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm45812-201ENSMUST00000212199 192 ntTSL 5 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 E230034D01Rik-203ENSMUST00000217357 1159 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Zfp341-202ENSMUST00000109702 3162 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Patl1-201ENSMUST00000061618 4221 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Myrf-201ENSMUST00000088013 5674 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Pdcd10-205ENSMUST00000161137 1927 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ces3b-201ENSMUST00000074403 1907 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Has3-203ENSMUST00000176144 4150 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Pigu-205ENSMUST00000165234 1626 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Cops3-201ENSMUST00000019517 1646 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm5122-202ENSMUST00000216854 1637 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ces2f-203ENSMUST00000212926 1430 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Rnf6-201ENSMUST00000067837 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ubr7-201ENSMUST00000046404 3261 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Il1r1-202ENSMUST00000114795 4832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Unc119-202ENSMUST00000100755 933 ntTSL 2 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ifitm1-202ENSMUST00000106040 560 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ifitm1-203ENSMUST00000106042 882 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm27191-201ENSMUST00000145973 448 ntTSL 3 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm5529-201ENSMUST00000165691 891 ntBASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm5267-201ENSMUST00000191574 1045 ntBASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm45542-201ENSMUST00000210456 438 ntTSL 2 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 AC160929.1-201ENSMUST00000221247 415 ntBASIC13.36□□□□□ -0.27
Scn11aQ9R053 CT025603.1-201ENSMUST00000224040 448 ntBASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ifitm1-201ENSMUST00000026564 736 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gzmk-201ENSMUST00000038212 1028 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Elmod3-201ENSMUST00000070990 2122 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Olfr538-201ENSMUST00000084457 933 ntAPPRIS P1 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Susd4-201ENSMUST00000085724 2983 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 n-R5s71-201ENSMUST00000093668 119 ntBASIC13.36□□□□□ -0.27
Scn11aQ9R053 Dnm1-202ENSMUST00000091089 3764 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 1700061G19Rik-201ENSMUST00000025048 2677 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Olfr1372-ps1-202ENSMUST00000203403 9812 ntTSL 5 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm2670-201ENSMUST00000180668 2804 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC13.36□□□□□ -0.27
Scn11aQ9R053 Gm5766-201ENSMUST00000160520 1977 ntBASIC13.36□□□□□ -0.27
Scn11aQ9R053 Ceacam9-201ENSMUST00000001984 1396 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Dpysl4-201ENSMUST00000026551 3552 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Aicda-201ENSMUST00000043301 2405 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Brd2-203ENSMUST00000114242 4483 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm22937-201ENSMUST00000103954 131 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Plac8-203ENSMUST00000112910 1224 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm11380-201ENSMUST00000118067 560 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm12684-201ENSMUST00000118675 999 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Tsc22d1-207ENSMUST00000140251 670 ntTSL 2 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm17190-202ENSMUST00000185178 1074 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm29521-201ENSMUST00000187061 745 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Calca-207ENSMUST00000206853 720 ntTSL 2 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Saa-ps-201ENSMUST00000211148 320 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Tmod3-205ENSMUST00000215821 898 ntTSL 3 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm6304-201ENSMUST00000096579 447 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm43167-201ENSMUST00000202001 1606 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Pla2g7-201ENSMUST00000024706 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Fhitos-201ENSMUST00000160149 1511 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Sec62-201ENSMUST00000029256 3967 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm20758-201ENSMUST00000220339 2171 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Map6-204ENSMUST00000127492 4920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Mrps23-201ENSMUST00000024486 1332 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Acsm2-202ENSMUST00000098084 2099 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Fam208a-201ENSMUST00000022450 7590 ntAPPRIS P1 TSL 5 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Rplp2-202ENSMUST00000106003 449 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Trub2-203ENSMUST00000113807 1035 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm13326-201ENSMUST00000118730 1011 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Krtcap2-204ENSMUST00000168900 582 ntTSL 3 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Cdhr4-208ENSMUST00000176373 492 ntTSL 5 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Scgb2b7-201ENSMUST00000178258 520 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm5210-201ENSMUST00000182150 1010 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm7880-201ENSMUST00000203748 871 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm33080-201ENSMUST00000205429 172 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 AC165249.1-202ENSMUST00000217990 734 ntTSL 3 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC13.35□□□□□ -0.27
Scn11aQ9R053 AC134601.2-201ENSMUST00000221071 130 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Gm10020-201ENSMUST00000081993 612 ntBASIC13.35□□□□□ -0.27
Scn11aQ9R053 Pdcl-202ENSMUST00000112940 3056 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
Scn11aQ9R053 Arhgef2-229ENSMUST00000177303 3000 ntAPPRIS ALT2 TSL 5 BASIC13.35□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 124.4 ms