Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Alas2-202ENSMUST00000112715 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Ncf1-202ENSMUST00000111275 2721 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm43143-201ENSMUST00000196083 2023 ntBASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Tyk2-201ENSMUST00000001036 4619 ntAPPRIS P2 TSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 1810063I02Rik-201ENSMUST00000130205 274 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Hnf4aos-203ENSMUST00000141329 839 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm24749-201ENSMUST00000157838 343 ntBASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm28071-201ENSMUST00000190355 478 ntBASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm42902-201ENSMUST00000199508 662 ntTSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 8030455M16Rik-201ENSMUST00000213014 902 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm26448-201ENSMUST00000082446 203 ntBASIC12□□□□□ -0.49
Ccdc40Q8BI79 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gm13187-202ENSMUST00000133873 1321 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Olfr1349-204ENSMUST00000207820 1325 ntAPPRIS P1 TSL 3 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Prdm16-203ENSMUST00000097759 8544 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 9530082P21Rik-203ENSMUST00000181605 3162 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Sik2-205ENSMUST00000176663 4107 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Txndc12-201ENSMUST00000030296 1359 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Asb6-201ENSMUST00000041726 4147 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 5430405H02Rik-201ENSMUST00000153616 1431 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 4930594M22Rik-202ENSMUST00000161599 3595 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Prdx2-202ENSMUST00000109733 1590 ntAPPRIS P1 TSL 2 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Snx13-202ENSMUST00000163677 3681 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Frmd4a-216ENSMUST00000176828 4355 ntTSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
Ccdc40Q8BI79 Rasal1-201ENSMUST00000031606 3212 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm18986-201ENSMUST00000216029 1986 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Atl2-201ENSMUST00000068282 3618 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm43636-201ENSMUST00000201501 2235 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Syn2-202ENSMUST00000169345 3854 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Ndufs1-203ENSMUST00000168099 2590 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Mmel1-203ENSMUST00000105634 2669 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Nsl1-202ENSMUST00000078259 4879 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Ctcfl-202ENSMUST00000179693 3174 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Ccdc136-208ENSMUST00000180829 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gpr155-203ENSMUST00000112043 3284 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm14190-201ENSMUST00000105073 153 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Limd2-203ENSMUST00000106875 936 ntAPPRIS P1 TSL 3 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm12749-201ENSMUST00000122138 1159 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Smim5-201ENSMUST00000131566 700 ntTSL 2 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm4819-201ENSMUST00000182170 1009 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 H2-Bl-202ENSMUST00000183560 316 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm38117-201ENSMUST00000194653 939 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm6450-201ENSMUST00000200896 574 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm9797-202ENSMUST00000218003 294 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Bzw1-201ENSMUST00000050552 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 5330413P13Rik-204ENSMUST00000210606 1464 ntTSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Frmd8-201ENSMUST00000025728 4504 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Tagln2-202ENSMUST00000111230 1586 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Gm3836-201ENSMUST00000211377 1613 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Slc39a14-202ENSMUST00000068044 4926 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 A130071D04Rik-201ENSMUST00000194467 5864 ntBASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Fga-201ENSMUST00000029630 2083 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Vamp5-203ENSMUST00000206154 2619 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Crybg3-205ENSMUST00000172910 2870 ntTSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Acsf2-201ENSMUST00000103164 3154 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Ywhaz-201ENSMUST00000022894 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Tnpo3-201ENSMUST00000012679 4251 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Pcdhb21-201ENSMUST00000061405 4705 ntAPPRIS P1 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Olfr1490-202ENSMUST00000213900 5165 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Fam26e-201ENSMUST00000069125 5323 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Ccdc40Q8BI79 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Itgal-204ENSMUST00000120857 4533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Epn3-202ENSMUST00000127305 3884 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Agpat3-204ENSMUST00000105389 3678 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Lrrc61-201ENSMUST00000101436 2674 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Gm10652-201ENSMUST00000199790 2622 ntBASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Mx2-201ENSMUST00000024112 2417 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Immt-202ENSMUST00000101301 2299 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Stim1-209ENSMUST00000211457 2183 ntTSL 5 BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Rgr-203ENSMUST00000225070 4704 ntBASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Gm9072-201ENSMUST00000218390 1514 ntBASIC11.98□□□□□ -0.49
Ccdc40Q8BI79 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 175.4 ms