Protein–RNA interactions for Protein: P40201

Chd1, Chromodomain-helicase-DNA-binding protein 1, mousemouse

Predictions only

Length 1,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd1P40201 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Ddx56-201ENSMUST00000004507 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Cobl-203ENSMUST00000109651 5541 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC16.76■□□□□ 0.27
Chd1P40201 Gm4419-201ENSMUST00000180671 1729 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Chd1P40201 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Nat8f6-202ENSMUST00000174143 1571 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
Chd1P40201 Trim26-210ENSMUST00000179968 3203 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
Chd1P40201 Prkce-201ENSMUST00000097274 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Smarca5-ps-201ENSMUST00000121843 3123 ntBASIC16.76■□□□□ 0.27
Chd1P40201 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Rhox3f-201ENSMUST00000115172 833 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Gm11770-201ENSMUST00000135048 548 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Gm24466-201ENSMUST00000179978 109 ntBASIC16.76■□□□□ 0.27
Chd1P40201 D330041H03Rik-202ENSMUST00000180390 411 ntTSL 2 BASIC16.76■□□□□ 0.27
Chd1P40201 D130017N08Rik-201ENSMUST00000180460 510 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Rhox3f-203ENSMUST00000184451 1008 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
Chd1P40201 Omt2b-203ENSMUST00000187667 727 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 1810018F18Rik-201ENSMUST00000188253 277 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Pcdh7-207ENSMUST00000199310 659 ntTSL 2 BASIC16.76■□□□□ 0.27
Chd1P40201 Gm44658-201ENSMUST00000207965 637 ntBASIC16.76■□□□□ 0.27
Chd1P40201 AC164978.2-201ENSMUST00000226645 857 ntBASIC16.76■□□□□ 0.27
Chd1P40201 Lrrc3-201ENSMUST00000057608 4296 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Chd1P40201 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Arrdc4-201ENSMUST00000048068 3905 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Gm42849-201ENSMUST00000202834 1584 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd1P40201 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Chd1P40201 Als2cr12-206ENSMUST00000191565 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Gpatch1-201ENSMUST00000079693 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Spert-201ENSMUST00000035243 1430 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Gad1-ps-201ENSMUST00000167243 1776 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
Chd1P40201 Nbdy-204ENSMUST00000185492 1346 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Gm24470-201ENSMUST00000104486 132 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Fgf1-203ENSMUST00000117566 418 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd1P40201 Gm13781-201ENSMUST00000124153 492 ntTSL 2 BASIC16.75■□□□□ 0.27
Chd1P40201 Gm26750-201ENSMUST00000181718 711 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd1P40201 Gm5801-201ENSMUST00000182247 780 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Gm30652-201ENSMUST00000199103 430 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Btg4-202ENSMUST00000213117 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Rce1-203ENSMUST00000224707 1255 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Gm28653-202ENSMUST00000227082 521 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Camk1g-204ENSMUST00000169907 1968 ntTSL 5 BASIC16.75■□□□□ 0.27
Chd1P40201 AC124561.1-202ENSMUST00000228652 1929 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Fyttd1-201ENSMUST00000023489 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Cfap53-201ENSMUST00000114895 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Sh2d2a-202ENSMUST00000107581 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 Gm42833-201ENSMUST00000196019 2124 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Gm16499-201ENSMUST00000204648 2065 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Chd1P40201 AC117194.1-201ENSMUST00000224847 3002 ntBASIC16.75■□□□□ 0.27
Chd1P40201 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Aida-201ENSMUST00000109166 4279 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Gm11231-201ENSMUST00000117895 1706 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Hsph1-211ENSMUST00000202361 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Pfn4-202ENSMUST00000178879 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Gspt1-205ENSMUST00000167571 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Use1-203ENSMUST00000110054 973 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Gm15033-201ENSMUST00000118188 673 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Gm12240-201ENSMUST00000120178 229 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Gm16587-201ENSMUST00000161943 863 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Gm29487-201ENSMUST00000190146 256 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Gm26901-204ENSMUST00000193732 631 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Gm42493-201ENSMUST00000197559 1121 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Gm42875-201ENSMUST00000197674 1015 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Polr1d-204ENSMUST00000200993 1167 ntTSL 5 BASIC16.74■□□□□ 0.27
Chd1P40201 Gm19798-201ENSMUST00000201502 457 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Taar1-201ENSMUST00000051532 1114 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Chd1P40201 E330021D16Rik-201ENSMUST00000058713 1116 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Chd1P40201 Atp6v1e2-201ENSMUST00000065758 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Cbx3-ps5-201ENSMUST00000091545 544 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Olfr1330-201ENSMUST00000094830 948 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Chd1P40201 Cbx3-ps2-201ENSMUST00000099421 544 ntBASIC16.74■□□□□ 0.27
Chd1P40201 Tubgcp3-201ENSMUST00000000776 3797 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Slc35b3-201ENSMUST00000021870 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Lrrc8d-201ENSMUST00000060531 3923 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Zim1-203ENSMUST00000203908 1740 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Chd1P40201 Tmem104-202ENSMUST00000100235 4561 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Cacna2d2-204ENSMUST00000166799 3474 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Chd1P40201 Armcx1-203ENSMUST00000113197 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Olfr1419-203ENSMUST00000217617 3087 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Chd1P40201 Zfp108-202ENSMUST00000205982 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Mrgprg-201ENSMUST00000058092 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Cd74-203ENSMUST00000167610 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Chd1P40201 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Chd1P40201 Zkscan3-204ENSMUST00000117721 5788 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Chd1P40201 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 58.7 ms