Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 AC131330.1-201ENSMUST00000227814 1015 ntBASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Gm7551-201ENSMUST00000089593 1074 ntBASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Gm43622-201ENSMUST00000200140 2019 ntBASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 4931406C07Rik-202ENSMUST00000178977 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Triobp-204ENSMUST00000109690 7023 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Cryz-208ENSMUST00000192462 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Gm10110-202ENSMUST00000228705 3220 ntBASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Fam107b-201ENSMUST00000027965 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Gm43760-201ENSMUST00000202120 3015 ntBASIC12.48□□□□□ -0.41
Chmp6P0C0A3 4933438K21Rik-201ENSMUST00000175787 1693 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Slc45a2-201ENSMUST00000117100 2983 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 1700030J22Rik-201ENSMUST00000070577 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Eef1d-205ENSMUST00000109972 1624 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
Chmp6P0C0A3 Bnc2-202ENSMUST00000107198 3948 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Zfp646-201ENSMUST00000050383 6310 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Elavl2-207ENSMUST00000107118 3797 ntTSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Phf24-203ENSMUST00000107976 6538 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Siglech-206ENSMUST00000171077 1934 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Hmbox1-202ENSMUST00000067843 2931 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Hnrnpm-206ENSMUST00000148178 3934 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm15941-205ENSMUST00000140044 1825 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 4932443L11Rik-202ENSMUST00000177130 2827 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm12579-201ENSMUST00000118040 783 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm11960-201ENSMUST00000122068 925 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm26047-201ENSMUST00000157308 113 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm26047-202ENSMUST00000198840 115 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm44867-201ENSMUST00000205675 530 ntTSL 3 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm45113-201ENSMUST00000207518 165 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Pgam2-201ENSMUST00000020768 840 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Olfr368-202ENSMUST00000217299 1200 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Nsd1-205ENSMUST00000224693 852 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Ginm1-202ENSMUST00000065124 300 ntBASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Rasgrp4-205ENSMUST00000159975 2296 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Col6a6-202ENSMUST00000098441 8781 ntAPPRIS P2 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Nmrk1-203ENSMUST00000159572 1706 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Gm45272-203ENSMUST00000211111 1693 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Dip2c-201ENSMUST00000166299 4822 ntTSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Corin-202ENSMUST00000167460 4639 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Fetub-204ENSMUST00000170805 1508 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Chmp6P0C0A3 Tiam1-204ENSMUST00000114124 7406 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Fam227a-202ENSMUST00000109646 1896 ntTSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Trim23-203ENSMUST00000069187 3546 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Megf11-203ENSMUST00000118485 3944 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Erich3-203ENSMUST00000189969 3460 ntBASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Herc4-201ENSMUST00000020258 3898 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Tspyl4-201ENSMUST00000047935 3879 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm11924-201ENSMUST00000152306 1750 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 C5ar1-202ENSMUST00000168818 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Jaml-201ENSMUST00000050020 2461 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Atg9b-201ENSMUST00000059401 3902 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Tcf4-240ENSMUST00000201781 2779 ntTSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Mier3-201ENSMUST00000047412 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Tnnt3-211ENSMUST00000105949 955 ntAPPRIS ALT2 TSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Ccdc163-202ENSMUST00000106462 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 1700080O16Rik-202ENSMUST00000114866 1232 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Fhit-201ENSMUST00000160340 1094 ntTSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm17111-201ENSMUST00000169981 411 ntTSL 3 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Fhit-208ENSMUST00000179394 453 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm27175-201ENSMUST00000183759 606 ntTSL 3 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm27223-201ENSMUST00000184653 606 ntTSL 3 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm29499-201ENSMUST00000189151 486 ntBASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm28329-201ENSMUST00000191208 689 ntBASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm29171-201ENSMUST00000191397 486 ntBASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Gm13522-202ENSMUST00000209682 997 ntTSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Fxyd2-211ENSMUST00000216289 668 ntTSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Rps12-208ENSMUST00000220070 494 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Olfr686-201ENSMUST00000050157 1018 ntAPPRIS P1 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Lcn6-201ENSMUST00000059693 1254 ntTSL 5 BASIC12.46□□□□□ -0.41
Chmp6P0C0A3 Rpp38-201ENSMUST00000062672 1042 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 48.3 ms