Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Bms1-201ENSMUST00000032237 4345 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Slc2a7-201ENSMUST00000059893 1578 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Ttc30a2-201ENSMUST00000099995 2431 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Dna2-203ENSMUST00000131422 4122 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Clic4-201ENSMUST00000037099 4119 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Trim3Q9R1R2 Gm17746-201ENSMUST00000223429 3772 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Sept11-201ENSMUST00000074733 5028 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Gm20658-201ENSMUST00000175871 1489 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Pabpc4-203ENSMUST00000106241 3050 ntAPPRIS P5 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Ntng1-211ENSMUST00000156177 4652 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Cdc37l1-201ENSMUST00000050148 5179 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Gm20696-201ENSMUST00000155466 3560 ntAPPRIS P1 TSL 2 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Hdac7-205ENSMUST00000118294 4069 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Plcd4-204ENSMUST00000113747 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Csk-204ENSMUST00000215396 2390 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Nf1-202ENSMUST00000108251 9217 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 CT010480.4-201ENSMUST00000224654 2283 ntBASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Pdzd7-203ENSMUST00000169459 3903 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Recql4-201ENSMUST00000036852 3922 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Fcrl1-203ENSMUST00000167200 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Cln8-201ENSMUST00000027554 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Gm14058-201ENSMUST00000116082 735 ntBASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Dmrtc1a-202ENSMUST00000119624 1149 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Gm8566-201ENSMUST00000120174 465 ntBASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 1700084C06Rik-201ENSMUST00000135674 750 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Ubl5-206ENSMUST00000161486 794 ntTSL 2 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Smpd4-223ENSMUST00000172182 516 ntTSL 3 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Gm19287-201ENSMUST00000203190 358 ntBASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Emp3-203ENSMUST00000210297 601 ntAPPRIS P1 TSL 3 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Mt3-202ENSMUST00000211915 440 ntTSL 3 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Nsd1-205ENSMUST00000224693 852 ntBASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Mir219a-1-201ENSMUST00000083621 110 ntBASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Vill-202ENSMUST00000074734 2440 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Hdac7-201ENSMUST00000079838 3985 ntAPPRIS ALT2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Jam3-201ENSMUST00000034472 1942 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 CT010498.2-201ENSMUST00000225690 1659 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 4930488L21Rik-201ENSMUST00000181864 3244 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Spats2l-201ENSMUST00000163239 2313 ntTSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Pcdhb14-201ENSMUST00000052387 8695 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Fer1l4-201ENSMUST00000109611 6106 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Psmc3-201ENSMUST00000002171 1819 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Ip6k2-201ENSMUST00000085018 1846 ntAPPRIS P2 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Tubgcp6-201ENSMUST00000041656 5357 ntAPPRIS ALT2 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Phkg2-201ENSMUST00000033086 1570 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 H2-T10-201ENSMUST00000166442 1481 ntAPPRIS P1 TSL 5 BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Trim3Q9R1R2 Hs6st2-201ENSMUST00000088172 4318 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Mknk1-202ENSMUST00000106513 2552 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Tgoln1-201ENSMUST00000070524 5013 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Ifi47-202ENSMUST00000109202 1773 ntAPPRIS P1 TSL 2 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm6580-201ENSMUST00000117504 1357 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Batf2-201ENSMUST00000045042 1391 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Tardbp-209ENSMUST00000165113 6495 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Ptgir-202ENSMUST00000144408 3305 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Tmem151a-201ENSMUST00000077066 4006 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Casc1-203ENSMUST00000111728 2682 ntAPPRIS ALT2 TSL 2 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm11941-201ENSMUST00000119904 610 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm23085-201ENSMUST00000157849 293 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Fam166b-206ENSMUST00000171134 1198 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm9034-201ENSMUST00000182071 1005 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm8100-201ENSMUST00000182906 988 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm27530-201ENSMUST00000184096 98 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm28982-201ENSMUST00000186895 512 ntTSL 3 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm2965-201ENSMUST00000198365 343 ntBASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm43050-202ENSMUST00000201152 651 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Cotl1-203ENSMUST00000211873 826 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 AC167229.2-201ENSMUST00000218902 675 ntTSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Cmtm2b-201ENSMUST00000041973 880 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Slc9a3-203ENSMUST00000221703 5118 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Zfp629-201ENSMUST00000058038 6120 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Dgkb-205ENSMUST00000221176 1439 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Atad5-202ENSMUST00000108239 7266 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Pdzk1-203ENSMUST00000107070 2711 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Rdh13-201ENSMUST00000008579 3034 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Slc12a9-201ENSMUST00000039991 3330 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Tpd52l2-202ENSMUST00000069712 1799 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Gabrr2-202ENSMUST00000108162 1933 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Nrap-204ENSMUST00000166203 5079 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
Trim3Q9R1R2 Ankrd31-203ENSMUST00000208758 5859 ntTSL 5 BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Trim3Q9R1R2 Adamts13-201ENSMUST00000014996 3474 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 67.9 ms