Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Usp2-208ENSMUST00000177054 2370 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ikzf2-202ENSMUST00000187184 2013 ntTSL 5 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ccdc50-203ENSMUST00000100026 7089 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 6030407O03Rik-201ENSMUST00000189514 2094 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm31718-201ENSMUST00000212406 1646 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Grb2-203ENSMUST00000106497 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Cpeb1-209ENSMUST00000178892 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ighv13-1-201ENSMUST00000103480 294 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ube2d-ps-201ENSMUST00000121354 441 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm14165-201ENSMUST00000121456 952 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Defa-ps17-201ENSMUST00000121849 171 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 4930571N24Rik-202ENSMUST00000142914 598 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm18014-201ENSMUST00000183369 817 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm44511-201ENSMUST00000204394 678 ntAPPRIS P5 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm44511-202ENSMUST00000204423 678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Klk1b15-ps-201ENSMUST00000206273 715 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm45040-201ENSMUST00000207742 578 ntTSL 3 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Olfr335-ps-201ENSMUST00000223545 939 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 AC129975.1-201ENSMUST00000224816 592 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ctrl-201ENSMUST00000034368 879 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm7589-201ENSMUST00000085631 534 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 AC090962.2-201ENSMUST00000225064 1801 ntBASIC13.39□□□□□ -0.27
Scn11aQ9R053 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm42878-202ENSMUST00000200170 4783 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Srpk3-201ENSMUST00000002081 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Gm13583-202ENSMUST00000151931 1476 ntTSL 2 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Zfp28-201ENSMUST00000081022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Sept9-205ENSMUST00000106354 3869 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Fbxo41-203ENSMUST00000161546 6357 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Cage1-201ENSMUST00000074969 2856 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Olfr541-203ENSMUST00000210357 1642 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Srebf2-201ENSMUST00000023100 4989 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
Scn11aQ9R053 Ppp2r5c-205ENSMUST00000221715 2367 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Bora-201ENSMUST00000022656 2726 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Cckar-201ENSMUST00000031093 2930 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm12461-201ENSMUST00000120231 1239 ntBASIC13.38□□□□□ -0.27
Scn11aQ9R053 Saxo2-202ENSMUST00000126478 430 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm25569-201ENSMUST00000157175 131 ntBASIC13.38□□□□□ -0.27
Scn11aQ9R053 4833405L11Rik-202ENSMUST00000222639 2145 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm9791-201ENSMUST00000060997 447 ntBASIC13.38□□□□□ -0.27
Scn11aQ9R053 Tspan8-202ENSMUST00000080630 1156 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Tnpo2-202ENSMUST00000166592 4884 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Prr16-201ENSMUST00000116639 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gcnt7-201ENSMUST00000099060 2220 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gsg1-203ENSMUST00000111910 1384 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Matn2-203ENSMUST00000226766 3252 ntBASIC13.38□□□□□ -0.27
Scn11aQ9R053 Olfr171-202ENSMUST00000205467 1406 ntAPPRIS ALT1 TSL 2 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Slc44a2-201ENSMUST00000034697 3456 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm15984-202ENSMUST00000156466 1534 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Adam20-201ENSMUST00000056331 2589 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 4930579F01Rik-202ENSMUST00000199293 1598 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm45012-201ENSMUST00000208323 1666 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm31138-201ENSMUST00000212296 1705 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Dglucy-202ENSMUST00000110069 3058 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Ikbkg-204ENSMUST00000114128 1867 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm5936-201ENSMUST00000114116 2857 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm5640-201ENSMUST00000114119 2861 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
Scn11aQ9R053 DXBay18-201ENSMUST00000080324 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Gm14685-201ENSMUST00000088459 2864 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 AC122811.1-201ENSMUST00000222257 2921 ntBASIC13.38□□□□□ -0.27
Scn11aQ9R053 Pip4k2c-201ENSMUST00000013970 3307 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
Scn11aQ9R053 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Pfn1-202ENSMUST00000108549 608 ntTSL 2 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm11952-201ENSMUST00000121172 821 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm4775-201ENSMUST00000169588 402 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm7211-201ENSMUST00000172692 1118 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm26875-201ENSMUST00000181006 950 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm37365-201ENSMUST00000193109 409 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm33707-201ENSMUST00000195135 569 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm43667-201ENSMUST00000198616 1095 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 CT030166.5-201ENSMUST00000222249 420 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 AC159196.1-201ENSMUST00000225524 377 ntBASIC13.37□□□□□ -0.27
Scn11aQ9R053 4930402K13Rik-201ENSMUST00000059967 1781 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Hrc-201ENSMUST00000085351 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm26615-201ENSMUST00000181522 3201 ntTSL 2 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Ehd3-201ENSMUST00000024860 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 1600014C10Rik-201ENSMUST00000067854 3143 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Spock3-202ENSMUST00000117377 3066 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Deup1-201ENSMUST00000045513 2583 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Gm3764-205ENSMUST00000181134 2203 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Cdip1-202ENSMUST00000117713 1964 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 Ranbp17-202ENSMUST00000102815 5001 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Scn11aQ9R053 2610028H24Rik-202ENSMUST00000105415 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
Retrieved 100 of 76,532 protein–RNA pairs in 66.9 ms