Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Loxl3-201ENSMUST00000000707 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Idi1-201ENSMUST00000169314 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gper1-201ENSMUST00000066211 2537 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Cd8b1-201ENSMUST00000065248 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Pla2g4a-202ENSMUST00000111926 2835 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Atp6v1d-201ENSMUST00000021536 3667 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Pcgf2-206ENSMUST00000169807 2347 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 C4a-207ENSMUST00000160679 5371 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Serpine1-202ENSMUST00000077523 2697 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm12106-201ENSMUST00000116006 1200 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm13916-201ENSMUST00000117368 628 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm12266-201ENSMUST00000120311 962 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 4933406I18Rik-201ENSMUST00000124673 905 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm11651-201ENSMUST00000130673 529 ntTSL 3 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm8459-201ENSMUST00000162504 760 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Erh-202ENSMUST00000166931 506 ntTSL 2 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm17040-202ENSMUST00000170597 889 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gapdh-ps14-201ENSMUST00000183246 1002 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 4930422M22Rik-201ENSMUST00000191492 948 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Ighv1-48-201ENSMUST00000191795 294 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm37590-201ENSMUST00000193294 603 ntTSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm4482-201ENSMUST00000200876 742 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm39460-201ENSMUST00000215728 1266 ntTSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm18515-201ENSMUST00000219755 797 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 AC134860.1-201ENSMUST00000224867 660 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Nit2-201ENSMUST00000023432 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Nsd3-210ENSMUST00000153597 1865 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Lnx1-202ENSMUST00000087161 2753 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Pbx1-208ENSMUST00000188912 3970 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Enpp4-201ENSMUST00000024757 4560 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Ccndbp1-203ENSMUST00000099489 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Tmcc1-208ENSMUST00000173140 1910 ntTSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Mb21d1-202ENSMUST00000070742 4049 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Cacna1s-204ENSMUST00000160641 6104 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Flot2-202ENSMUST00000073660 2568 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Bcl2l2-203ENSMUST00000133397 3813 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gm45496-201ENSMUST00000209918 2917 ntBASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Rin1-201ENSMUST00000025818 4184 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Phactr1-201ENSMUST00000066928 2013 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Bco1-202ENSMUST00000167370 1747 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
Trim11Q99PQ2 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Olfr177-202ENSMUST00000217377 2401 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Tnip1-202ENSMUST00000102730 2787 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Serpina1f-202ENSMUST00000117053 2830 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Fkbp15-204ENSMUST00000107461 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Slc24a5-201ENSMUST00000070353 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gm24891-201ENSMUST00000104391 136 ntBASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gm12463-201ENSMUST00000118271 849 ntBASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Asb8-202ENSMUST00000123626 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Asb8-203ENSMUST00000123922 1162 ntAPPRIS P1 TSL 3 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 E130307A14Rik-204ENSMUST00000139356 701 ntTSL 3 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Ccdc127-205ENSMUST00000162672 677 ntTSL 3 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Abracl-204ENSMUST00000220110 768 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Hbb-y-201ENSMUST00000033229 633 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Nhlrc3-201ENSMUST00000056749 5047 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Best1-201ENSMUST00000117346 2080 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 2410002F23Rik-204ENSMUST00000107948 2908 ntAPPRIS P2 TSL 2 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Rapgef2-206ENSMUST00000195708 6964 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gm19178-201ENSMUST00000217524 1819 ntBASIC13.04□□□□□ -0.32
Trim11Q99PQ2 6030466F02Rik-201ENSMUST00000212339 1434 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Vamp1-202ENSMUST00000063588 1400 ntTSL 2 BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Crkl-201ENSMUST00000006293 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 4933424N20Rik-201ENSMUST00000200749 1463 ntBASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Tmem159-201ENSMUST00000033210 1484 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Cdc42ep2-201ENSMUST00000055458 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Gm44663-201ENSMUST00000206898 3150 ntBASIC13.04□□□□□ -0.32
Trim11Q99PQ2 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 6430550D23Rik-201ENSMUST00000086145 1520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Knop1-206ENSMUST00000126792 3253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Rims3-202ENSMUST00000106283 6437 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Cdhr4-211ENSMUST00000177173 2480 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Hsd3b4-201ENSMUST00000179429 1575 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Gm10681-203ENSMUST00000186215 1575 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Wnt7b-203ENSMUST00000167968 3408 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Zcchc8-204ENSMUST00000196282 4350 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Tcirg1-204ENSMUST00000126070 3041 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Gm35850-202ENSMUST00000211705 2120 ntBASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Angptl4-201ENSMUST00000002360 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Cad-204ENSMUST00000201182 6529 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Polr3e-201ENSMUST00000033173 4194 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Ccdc15-206ENSMUST00000217238 1747 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Btg2-201ENSMUST00000020692 2743 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Trim11Q99PQ2 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms