Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Gm8342-201ENSMUST00000209839 757 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gm2517-201ENSMUST00000215651 348 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Tnfsf13b-201ENSMUST00000033892 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gm6781-201ENSMUST00000038304 1242 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Il17c-201ENSMUST00000050963 719 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Phxr2-201ENSMUST00000060761 1159 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Gm8420-201ENSMUST00000097103 598 ntBASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Telo2-201ENSMUST00000024987 3434 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Btbd9-202ENSMUST00000168787 6857 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Zfp558-202ENSMUST00000034647 1701 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Trim11-202ENSMUST00000108809 3522 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Rps9-202ENSMUST00000108623 1347 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Celf1-204ENSMUST00000111448 4432 ntAPPRIS ALT1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Ttc25-201ENSMUST00000006976 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Mthfd1l-202ENSMUST00000117291 3669 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Myh6-201ENSMUST00000081857 6113 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Svopl-202ENSMUST00000096040 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Hlcs-201ENSMUST00000099512 4833 ntAPPRIS P2 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Vmn1r193-202ENSMUST00000227457 6429 ntAPPRIS P1 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Ubap1-201ENSMUST00000072866 3456 ntAPPRIS P1 TSL 1 (best) BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.27□□□□□ -0.45
Upf3bQ3ULL6 Fosb-201ENSMUST00000003640 3782 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Dnajb6-203ENSMUST00000114839 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 AU019823-205ENSMUST00000171462 3339 ntAPPRIS P1 TSL 3 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Crispld2-201ENSMUST00000034282 2898 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Ddo-202ENSMUST00000213442 2408 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Myo16-201ENSMUST00000042103 6725 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Col9a1-202ENSMUST00000088349 3059 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Bbip1-201ENSMUST00000135402 2488 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm5740-201ENSMUST00000211003 1857 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gng7-205ENSMUST00000118465 875 ntAPPRIS ALT1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Mup-ps26-201ENSMUST00000121751 202 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Spx-202ENSMUST00000126521 357 ntAPPRIS P2 TSL 5 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Mrpl23-ps1-201ENSMUST00000173086 580 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm20535-201ENSMUST00000173157 1268 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Park2-204ENSMUST00000179624 1108 ntTSL 5 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm29164-201ENSMUST00000185454 1024 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 4933408A14Rik-201ENSMUST00000199037 729 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm7504-201ENSMUST00000201449 424 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Pdzd9-203ENSMUST00000208635 1238 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm45338-206ENSMUST00000211460 1155 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 5830428M24Rik-201ENSMUST00000221805 825 ntTSL 2 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Rbp2-201ENSMUST00000035029 672 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Fam151b-201ENSMUST00000040106 1152 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Aldh3a2-203ENSMUST00000108715 2578 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Nol6-201ENSMUST00000030138 4599 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 St14-201ENSMUST00000034478 3259 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 AC154537.1-201ENSMUST00000226101 1304 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Hdac6-202ENSMUST00000115642 4069 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Rpap1-202ENSMUST00000099529 4813 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Natd1-201ENSMUST00000019075 4179 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Ophn1-201ENSMUST00000033560 7170 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gucy2e-203ENSMUST00000108665 3645 ntAPPRIS P1 TSL 5 BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Lbh-201ENSMUST00000024857 3064 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Gm44573-201ENSMUST00000191753 2370 ntBASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Hpgd-201ENSMUST00000034026 1683 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
Upf3bQ3ULL6 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Chl1-204ENSMUST00000203912 4628 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Pde4b-203ENSMUST00000097950 2756 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Irak4-201ENSMUST00000074936 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Thsd4-202ENSMUST00000098660 8796 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Kalrn-201ENSMUST00000076810 8940 ntAPPRIS P1 TSL 5 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Odf2-208ENSMUST00000113763 2364 ntAPPRIS P3 TSL 5 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm13328-201ENSMUST00000120816 1020 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm11836-201ENSMUST00000121022 441 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Dnmt3l-203ENSMUST00000131825 1113 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm15972-201ENSMUST00000132571 418 ntTSL 2 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm4726-201ENSMUST00000135604 736 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Dnmt3l-206ENSMUST00000139539 1279 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 4930471C06Rik-202ENSMUST00000143070 579 ntTSL 3 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm6019-201ENSMUST00000148369 736 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm7741-201ENSMUST00000181445 989 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 1700008K24Rik-201ENSMUST00000185974 833 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 8030442B05Rik-201ENSMUST00000192626 1035 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm8574-201ENSMUST00000203207 924 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm44100-201ENSMUST00000204329 436 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm5996-201ENSMUST00000211110 718 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm6653-201ENSMUST00000218063 1288 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 AC154276.3-201ENSMUST00000227643 998 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 1700013F07Rik-201ENSMUST00000029485 661 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Gm10254-201ENSMUST00000052888 867 ntBASIC12.25□□□□□ -0.45
Upf3bQ3ULL6 Phf24-202ENSMUST00000107975 6494 ntAPPRIS P1 TSL 2 BASIC12.25□□□□□ -0.45
Retrieved 100 of 76,532 protein–RNA pairs in 50.7 ms