Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Lmna-201ENSMUST00000029699 3156 ntAPPRIS P3 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Crmp1-201ENSMUST00000031004 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm11986-201ENSMUST00000149481 1439 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Ints5-201ENSMUST00000096249 3294 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Tepsin-202ENSMUST00000093901 2770 ntAPPRIS P2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 AC123834.1-201ENSMUST00000225346 2043 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm38116-201ENSMUST00000193873 1533 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Gck-203ENSMUST00000109823 2361 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Igfbp5-201ENSMUST00000027377 6006 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Pik3r6-201ENSMUST00000060441 3237 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Capn2-201ENSMUST00000068505 3225 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Zdhhc21-202ENSMUST00000107239 1148 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm13204-201ENSMUST00000120110 821 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm12791-201ENSMUST00000120788 655 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Myl3-202ENSMUST00000124267 575 ntAPPRIS ALT2 TSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm12756-201ENSMUST00000126294 599 ntTSL 3 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Cdpf1-205ENSMUST00000150995 566 ntAPPRIS P1 TSL 3 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm25830-201ENSMUST00000158923 132 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm10320-201ENSMUST00000170205 527 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Kcnip4-207ENSMUST00000176191 2116 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 1110059E24Rik-205ENSMUST00000178523 629 ntTSL 3 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm24954-201ENSMUST00000178831 110 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm7069-201ENSMUST00000182418 1008 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm43163-201ENSMUST00000196571 442 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm35960-201ENSMUST00000202712 767 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm4065-202ENSMUST00000218911 986 ntTSL 3 BASIC9.84□□□□□ -0.83
Col8a1Q00780 CT009546.1-201ENSMUST00000222573 1120 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Olfr372-201ENSMUST00000093434 1016 ntAPPRIS P1 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm6040-201ENSMUST00000095430 857 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gm28373-201ENSMUST00000178129 2724 ntTSL 2 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Tmem201-203ENSMUST00000105687 3697 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Riox2-206ENSMUST00000160571 2244 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Ptpn4-201ENSMUST00000064091 10874 ntAPPRIS P1 TSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Sncaip-209ENSMUST00000179625 2568 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Slc30a3-206ENSMUST00000202740 1989 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Kyat1-202ENSMUST00000113659 1367 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 AC158636.1-201ENSMUST00000220118 1393 ntBASIC9.84□□□□□ -0.83
Col8a1Q00780 Pik3r1-201ENSMUST00000035532 2923 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Trip13-201ENSMUST00000022053 3399 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Srr-202ENSMUST00000108447 3138 ntTSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Smg8-201ENSMUST00000020801 3218 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Myh10-203ENSMUST00000102611 7791 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.83
Col8a1Q00780 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC9.84□□□□□ -0.83
Col8a1Q00780 Trmt1l-201ENSMUST00000065625 2749 ntAPPRIS P1 TSL 1 (best) BASIC9.84□□□□□ -0.84
Col8a1Q00780 Myo18a-207ENSMUST00000102488 7409 ntAPPRIS P3 TSL 5 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Tfe3-204ENSMUST00000115677 2943 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Ffar1-201ENSMUST00000052700 4175 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Kbtbd12-202ENSMUST00000120933 4644 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Tgfbr2-201ENSMUST00000035014 3476 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Adra1a-206ENSMUST00000225182 2337 ntBASIC9.83□□□□□ -0.84
Col8a1Q00780 Mapk1ip1-201ENSMUST00000075667 1502 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Rnf4-201ENSMUST00000030992 2895 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Rpl22-204ENSMUST00000139685 2051 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Slc6a5-201ENSMUST00000056442 7065 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Riok1-201ENSMUST00000021866 2738 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Trim29-201ENSMUST00000034511 2735 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Chrd-201ENSMUST00000007171 3275 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Hmgn2-201ENSMUST00000100472 881 ntAPPRIS ALT1 TSL 2 BASIC9.83□□□□□ -0.84
Col8a1Q00780 0610010K14Rik-206ENSMUST00000108576 576 ntAPPRIS ALT1 TSL 2 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Gm11500-201ENSMUST00000118237 601 ntBASIC9.83□□□□□ -0.84
Col8a1Q00780 Gm44805-202ENSMUST00000150569 587 ntAPPRIS P1 TSL 2 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Tro-208ENSMUST00000164071 891 ntAPPRIS ALT2 TSL 5 BASIC9.83□□□□□ -0.84
Col8a1Q00780 7420461P10Rik-201ENSMUST00000169439 781 ntAPPRIS P2 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Gm20471-201ENSMUST00000172793 626 ntTSL 3 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Gm26647-201ENSMUST00000180816 1255 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Gm9034-201ENSMUST00000182071 1005 ntBASIC9.83□□□□□ -0.84
Col8a1Q00780 CT030652.1-201ENSMUST00000227377 1235 ntBASIC9.83□□□□□ -0.84
Col8a1Q00780 AC105408.1-201ENSMUST00000227771 802 ntBASIC9.83□□□□□ -0.84
Col8a1Q00780 3100002H09Rik-201ENSMUST00000053604 873 ntAPPRIS P1 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Prex1-203ENSMUST00000109246 2386 ntTSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Sp7-201ENSMUST00000078508 2906 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Peg10-202ENSMUST00000176204 6667 ntAPPRIS P2 TSL 2 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Ntrk2-201ENSMUST00000079828 8744 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Atp6v1h-201ENSMUST00000044369 2049 ntAPPRIS P1 TSL 1 (best) BASIC9.83□□□□□ -0.84
Col8a1Q00780 Gm3755-201ENSMUST00000169555 1462 ntAPPRIS P1 TSL 5 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Thoc5-202ENSMUST00000101615 2116 ntTSL 5 BASIC9.83□□□□□ -0.84
Col8a1Q00780 Camk2b-207ENSMUST00000101586 1590 ntTSL 5 BASIC9.83□□□□□ -0.84
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms