Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Sirpa-201ENSMUST00000049262 3644 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Lactb2-201ENSMUST00000027071 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Tmprss5-202ENSMUST00000165088 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Cela2a-201ENSMUST00000102481 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm26286-201ENSMUST00000104166 134 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Spata3-202ENSMUST00000113344 1047 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Defa-ps4-201ENSMUST00000118021 183 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Gm11660-201ENSMUST00000120955 412 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Pcbd2-202ENSMUST00000124968 546 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm3329-201ENSMUST00000159873 556 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Gm15954-201ENSMUST00000160746 466 ntTSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm26952-201ENSMUST00000181996 409 ntTSL 3 BASIC13.65□□□□□ -0.22
Rfx1P48377 2010320M18Rik-201ENSMUST00000191396 1009 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm45598-202ENSMUST00000210719 986 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Tmem258-201ENSMUST00000040372 606 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Mrpl41-201ENSMUST00000045604 776 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 4632427E13Rik-202ENSMUST00000147198 6559 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Plpp3-201ENSMUST00000064139 3159 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm19327-201ENSMUST00000220651 3271 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Fbxo40-202ENSMUST00000114806 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Ttc8-201ENSMUST00000079146 2270 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Dnmbp-206ENSMUST00000212592 3901 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Chd7-206ENSMUST00000170391 3462 ntTSL 5 BASIC13.65□□□□□ -0.23
Rfx1P48377 Khnyn-201ENSMUST00000022831 3898 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
Rfx1P48377 Gm19299-202ENSMUST00000215724 1435 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Gm1840-201ENSMUST00000051687 1432 ntBASIC13.64□□□□□ -0.23
Rfx1P48377 Scaf1-201ENSMUST00000085383 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Arsg-202ENSMUST00000106696 1508 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Tfpi2-201ENSMUST00000031674 1530 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Tfdp1-201ENSMUST00000170909 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Zcwpw1-201ENSMUST00000035852 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Tifa-205ENSMUST00000171621 2547 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Sema4a-201ENSMUST00000029700 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Jmjd4-202ENSMUST00000108777 4351 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Cfap100-207ENSMUST00000165673 2072 ntAPPRIS P2 TSL 5 BASIC13.64□□□□□ -0.23
Rfx1P48377 Ranbp10-201ENSMUST00000041400 5308 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Adgrv1-206ENSMUST00000128120 1591 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
Rfx1P48377 Gm14150-201ENSMUST00000122404 1354 ntBASIC13.64□□□□□ -0.23
Rfx1P48377 Dnmt3aos-201ENSMUST00000144896 1385 ntTSL 2 BASIC13.64□□□□□ -0.23
Rfx1P48377 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC13.64□□□□□ -0.23
Rfx1P48377 Gm27572-201ENSMUST00000183702 255 ntBASIC13.64□□□□□ -0.23
Rfx1P48377 C530044C16Rik-202ENSMUST00000205217 1239 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Gm5705-201ENSMUST00000066241 711 ntBASIC13.64□□□□□ -0.23
Rfx1P48377 Ifi27-201ENSMUST00000066701 889 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC13.64□□□□□ -0.23
Rfx1P48377 Lyz1-201ENSMUST00000092162 1263 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Nfya-201ENSMUST00000046719 3645 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Samhd1-203ENSMUST00000109549 3245 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Cycs-202ENSMUST00000161401 3123 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Gpr17-201ENSMUST00000064016 5195 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Inpp4a-208ENSMUST00000137266 2934 ntTSL 5 BASIC13.64□□□□□ -0.23
Rfx1P48377 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC13.64□□□□□ -0.23
Rfx1P48377 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Tdrd3-202ENSMUST00000168275 2657 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Rfx1P48377 Gm12153-201ENSMUST00000148504 2509 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Hnrnpc-210ENSMUST00000228232 2535 ntAPPRIS P5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Arhgap24-205ENSMUST00000112853 2853 ntTSL 5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Scn10a-202ENSMUST00000213392 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Slc7a7-201ENSMUST00000000984 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Kars-201ENSMUST00000034426 2008 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Rcbtb2-223ENSMUST00000170677 3573 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Stau2-206ENSMUST00000128957 3907 ntTSL 5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Gm11564-201ENSMUST00000105055 691 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Rfx1P48377 Gm11930-201ENSMUST00000117788 190 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm11500-201ENSMUST00000118237 601 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Sh2d6-203ENSMUST00000159877 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Sh2d6-206ENSMUST00000162561 1251 ntAPPRIS P5 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Olfr668-201ENSMUST00000164391 957 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Rfx1P48377 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Gm9866-204ENSMUST00000183238 351 ntTSL 5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Mir8093-201ENSMUST00000185043 137 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm29164-201ENSMUST00000185454 1024 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm34767-201ENSMUST00000191813 1062 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm6621-201ENSMUST00000193251 772 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm31256-201ENSMUST00000194705 506 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm43962-201ENSMUST00000203898 190 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Gm18935-201ENSMUST00000212692 664 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 CT009713.10-202ENSMUST00000225734 696 ntBASIC13.63□□□□□ -0.23
Rfx1P48377 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Rfx1P48377 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Rfx1P48377 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Arntl2-202ENSMUST00000111636 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Ccdc183-201ENSMUST00000028309 1719 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Rfx1P48377 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Car12-202ENSMUST00000085420 3639 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Oplah-201ENSMUST00000023222 3970 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 C130050O18Rik-202ENSMUST00000163940 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Map3k12-208ENSMUST00000171565 4318 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Rfx1P48377 Gtf3c1-204ENSMUST00000205659 6570 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms