Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Lrpap1-201ENSMUST00000030986 2981 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Rab27a-201ENSMUST00000034722 2979 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Pde4c-202ENSMUST00000110095 3290 ntAPPRIS P2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Pip5k1a-205ENSMUST00000107233 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Clcn6-205ENSMUST00000137724 5198 ntAPPRIS ALT1 TSL 5 BASIC9.31□□□□□ -0.92
Cdx1P18111 Apbb1-217ENSMUST00000191011 2712 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Slc4a9-201ENSMUST00000074298 2714 ntAPPRIS P3 TSL 5 BASIC9.31□□□□□ -0.92
Cdx1P18111 Gm17980-201ENSMUST00000217977 2349 ntBASIC9.31□□□□□ -0.92
Cdx1P18111 Sorbs1-201ENSMUST00000099466 2223 ntAPPRIS ALT2 TSL 5 BASIC9.31□□□□□ -0.92
Cdx1P18111 Itih3-205ENSMUST00000227995 2100 ntAPPRIS ALT2 BASIC9.31□□□□□ -0.92
Cdx1P18111 Plekhb1-203ENSMUST00000107044 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Kif4-201ENSMUST00000048962 4983 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
Cdx1P18111 Rbm5-201ENSMUST00000035199 3064 ntAPPRIS ALT1 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm28635-201ENSMUST00000189772 4734 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Sdccag8-201ENSMUST00000027785 2776 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 1700018A04Rik-204ENSMUST00000221561 2569 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Trpv4-205ENSMUST00000112225 3226 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Sept9-204ENSMUST00000106349 2932 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Cep250-201ENSMUST00000039994 7979 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC9.3□□□□□ -0.92
Cdx1P18111 Rbm10-205ENSMUST00000115375 3698 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 C130013H08Rik-201ENSMUST00000197569 3692 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Rpap1-201ENSMUST00000048493 4744 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 AC113441.2-201ENSMUST00000221538 1468 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Nr4a2-202ENSMUST00000112627 2400 ntTSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Myom2-201ENSMUST00000033842 5075 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Bean1-206ENSMUST00000213077 1373 ntAPPRIS ALT2 TSL 3 BASIC9.3□□□□□ -0.92
Cdx1P18111 Dglucy-204ENSMUST00000110073 3184 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm24830-201ENSMUST00000102024 166 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Thoc6-203ENSMUST00000115489 1083 ntTSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gstt1-202ENSMUST00000120177 1105 ntTSL 2 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm12997-201ENSMUST00000120207 640 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm11290-201ENSMUST00000124833 396 ntTSL 3 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm13316-201ENSMUST00000140537 691 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Mir5132-201ENSMUST00000175166 71 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm25890-201ENSMUST00000177643 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Rnu1b2-201ENSMUST00000178073 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Rnu1b1-201ENSMUST00000178250 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm22614-201ENSMUST00000178300 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm31256-201ENSMUST00000194705 506 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm38297-201ENSMUST00000195122 1057 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm42838-201ENSMUST00000196503 439 ntTSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm42797-201ENSMUST00000197573 494 ntTSL 3 BASIC9.3□□□□□ -0.92
Cdx1P18111 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 H2-M10.2-201ENSMUST00000023845 1113 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Asb9-201ENSMUST00000033756 1139 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Fam96a-201ENSMUST00000034945 1240 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm22042-201ENSMUST00000082989 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm26232-201ENSMUST00000083360 166 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm24136-201ENSMUST00000083374 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Rnu1b6-201ENSMUST00000083839 166 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Gm26110-201ENSMUST00000083971 165 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Aurkc-201ENSMUST00000086248 1154 ntAPPRIS P3 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Olfr366-201ENSMUST00000091001 930 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
Cdx1P18111 Anxa7-201ENSMUST00000065504 2851 ntAPPRIS P2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Slc26a11-201ENSMUST00000050880 2695 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Med24-202ENSMUST00000100500 3133 ntAPPRIS ALT2 TSL 5 BASIC9.3□□□□□ -0.92
Cdx1P18111 Prpf40b-202ENSMUST00000118287 3129 ntAPPRIS ALT2 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Ctnnal1-201ENSMUST00000045142 3664 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Fam234b-201ENSMUST00000111915 4221 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Gmppb-201ENSMUST00000047947 1429 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Ppp6r3-203ENSMUST00000172362 4633 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Nfe2l1-212ENSMUST00000169828 3530 ntTSL 2 BASIC9.3□□□□□ -0.92
Cdx1P18111 Impa1-202ENSMUST00000118410 2988 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Gm5740-201ENSMUST00000211003 1857 ntBASIC9.3□□□□□ -0.92
Cdx1P18111 Ewsr1-201ENSMUST00000063232 1320 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC9.3□□□□□ -0.92
Cdx1P18111 Pyurf-201ENSMUST00000053386 3573 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Zfyve1-201ENSMUST00000048319 4036 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Diablo-207ENSMUST00000145152 2588 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Aldh4a1-201ENSMUST00000039818 3382 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Mthfr-201ENSMUST00000069604 6072 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Zfp354a-204ENSMUST00000109122 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Ccdc136-202ENSMUST00000115275 3279 ntAPPRIS ALT2 TSL 5 BASIC9.29□□□□□ -0.92
Cdx1P18111 Tardbp-204ENSMUST00000105699 1904 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Gm10782-202ENSMUST00000223775 1480 ntBASIC9.29□□□□□ -0.92
Cdx1P18111 Alas1-202ENSMUST00000112524 3089 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Tuft1-201ENSMUST00000006123 2631 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Tmem231-201ENSMUST00000034429 2984 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 A1cf-201ENSMUST00000075838 2989 ntAPPRIS P2 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC9.29□□□□□ -0.92
Cdx1P18111 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Ctnnd1-204ENSMUST00000099941 5783 ntTSL 5 BASIC9.29□□□□□ -0.92
Cdx1P18111 Cyp26b1-205ENSMUST00000205228 4288 ntTSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Slc7a3-203ENSMUST00000113710 2750 ntAPPRIS P1 TSL 5 BASIC9.29□□□□□ -0.92
Cdx1P18111 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC9.29□□□□□ -0.92
Cdx1P18111 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC9.29□□□□□ -0.92
Cdx1P18111 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC9.29□□□□□ -0.92
Cdx1P18111 Blvrb-202ENSMUST00000108357 782 ntTSL 2 BASIC9.29□□□□□ -0.92
Cdx1P18111 Rps10-203ENSMUST00000114882 614 ntAPPRIS P1 TSL 1 (best) BASIC9.29□□□□□ -0.92
Cdx1P18111 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC9.29□□□□□ -0.92
Cdx1P18111 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC9.29□□□□□ -0.92
Cdx1P18111 Ly6g6c-201ENSMUST00000173207 598 ntAPPRIS ALT2 TSL 3 BASIC9.29□□□□□ -0.92
Retrieved 100 of 76,532 protein–RNA pairs in 61.3 ms