Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Apc-201ENSMUST00000066133 1185 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Cacna1s-202ENSMUST00000112068 6018 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Slc22a16-201ENSMUST00000019978 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Psap-204ENSMUST00000177779 2657 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
Hoxd3P09027 Psap-205ENSMUST00000179238 2657 ntAPPRIS P3 TSL 5 BASIC9.21□□□□□ -0.94
Hoxd3P09027 Psap-201ENSMUST00000004316 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Mtf2-201ENSMUST00000081567 4060 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Rtbdn-204ENSMUST00000152378 2322 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Srgap3-202ENSMUST00000088373 8887 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 D130051D11Rik-201ENSMUST00000189171 6188 ntBASIC9.21□□□□□ -0.94
Hoxd3P09027 Gm31121-201ENSMUST00000197948 1413 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Actb-201ENSMUST00000100497 1920 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Gm43522-201ENSMUST00000196697 1922 ntBASIC9.21□□□□□ -0.94
Hoxd3P09027 Tinf2-201ENSMUST00000007733 2956 ntAPPRIS P2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Camta2-205ENSMUST00000119120 4460 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Exd1-201ENSMUST00000060009 6042 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
Hoxd3P09027 Gm18881-201ENSMUST00000220450 1545 ntBASIC9.21□□□□□ -0.94
Hoxd3P09027 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Ibsp-201ENSMUST00000031246 2068 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm1995-201ENSMUST00000220838 2602 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Dph6-201ENSMUST00000028640 2632 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Lrp2-203ENSMUST00000100051 4359 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Ninl-201ENSMUST00000109896 5093 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Tapbp-201ENSMUST00000025161 2894 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Sdr9c7-201ENSMUST00000047134 2868 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Ccpg1-208ENSMUST00000150826 2939 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Igtp-202ENSMUST00000094169 1767 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm44090-201ENSMUST00000204669 1834 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Pbrm1-207ENSMUST00000112095 7907 ntTSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Foxl2os-201ENSMUST00000181706 3095 ntTSL 2 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Ralgps2-211ENSMUST00000190648 2498 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Fancc-214ENSMUST00000161977 3111 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Inca1-202ENSMUST00000108541 1150 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm12165-201ENSMUST00000117047 342 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm6506-201ENSMUST00000119775 1136 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm15432-201ENSMUST00000121106 195 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Inca1-205ENSMUST00000126114 1189 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Cox7c-203ENSMUST00000131011 540 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm11683-201ENSMUST00000147006 918 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 U2af1l4-234ENSMUST00000171850 564 ntTSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Mir3547-201ENSMUST00000175461 88 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Crnde-207ENSMUST00000180102 732 ntTSL 3 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm19353-201ENSMUST00000184561 445 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm27184-201ENSMUST00000185095 607 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm21976-204ENSMUST00000186911 528 ntTSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 1700088E04Rik-206ENSMUST00000187550 1168 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm8869-201ENSMUST00000195222 947 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Rpl36-ps9-201ENSMUST00000196458 277 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Rbakdn-201ENSMUST00000198334 520 ntTSL 2 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm43821-201ENSMUST00000199198 729 ntTSL 3 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm9555-201ENSMUST00000200908 583 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm7684-201ENSMUST00000211891 829 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 AC166256.1-201ENSMUST00000219081 1271 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC9.2□□□□□ -0.94
Hoxd3P09027 AC151275.1-201ENSMUST00000224870 585 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Tmem253-204ENSMUST00000228408 415 ntAPPRIS ALT2 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Ppbp-201ENSMUST00000031319 1083 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Neil1-201ENSMUST00000034842 1170 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Cdk19os-201ENSMUST00000044774 534 ntTSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm21411-201ENSMUST00000049821 750 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Ntng1-201ENSMUST00000051253 327 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Inca1-201ENSMUST00000073625 1218 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Me3-202ENSMUST00000032856 4485 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm7680-201ENSMUST00000216198 1348 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Zp3-201ENSMUST00000005073 1323 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Tnip1-204ENSMUST00000108885 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 AL732309.1-201ENSMUST00000228627 2045 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Plekha6-203ENSMUST00000186917 4820 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm37105-201ENSMUST00000192251 2085 ntBASIC9.2□□□□□ -0.94
Hoxd3P09027 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Oasl1-201ENSMUST00000031540 2125 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Pcgf2-202ENSMUST00000103148 1438 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Cd72-205ENSMUST00000107926 1419 ntAPPRIS P3 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Cd79b-201ENSMUST00000044228 1431 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Cd72-203ENSMUST00000098105 1420 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Eif1a-201ENSMUST00000078079 2879 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Qrich2-201ENSMUST00000093909 2156 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm34785-201ENSMUST00000222571 4582 ntTSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Crat-201ENSMUST00000028207 3833 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 4933440M02Rik-202ENSMUST00000205794 1601 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
Hoxd3P09027 Pcdh15-238ENSMUST00000193739 5034 ntAPPRIS ALT2 TSL 5 BASIC9.2□□□□□ -0.94
Hoxd3P09027 Gm9129-201ENSMUST00000218173 1689 ntBASIC9.2□□□□□ -0.94
Retrieved 100 of 76,532 protein–RNA pairs in 73.5 ms