Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Fam135b-201ENSMUST00000022953 4623 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Slc10a7-201ENSMUST00000034111 3595 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Eya3-202ENSMUST00000079157 5186 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Fut10-202ENSMUST00000110527 2327 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Ramp1-201ENSMUST00000097648 2325 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gnl2-201ENSMUST00000030684 2366 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Dcun1d4-203ENSMUST00000113558 4023 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Rbm39-201ENSMUST00000029149 2711 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Kalrn-212ENSMUST00000114973 5253 ntTSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Vti1a-201ENSMUST00000095950 3405 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Nup188-201ENSMUST00000064447 5710 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Pcsk9-201ENSMUST00000049507 3521 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Plekhg4-206ENSMUST00000214056 3654 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Wdr60-201ENSMUST00000039349 3721 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Sumo2-204ENSMUST00000118155 884 ntTSL 2 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm11591-201ENSMUST00000120063 702 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm1335-201ENSMUST00000121653 386 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Retn-201ENSMUST00000012849 874 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm7809-201ENSMUST00000153199 742 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Tnfrsf12a-202ENSMUST00000167059 858 ntTSL 2 BASIC9.44□□□□□ -0.9
Hmgb3O54879 1700088E04Rik-201ENSMUST00000169604 1249 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 4833427G06Rik-201ENSMUST00000170947 973 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Ddt-201ENSMUST00000001716 649 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 C87198-201ENSMUST00000173553 1045 ntTSL 3 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm6222-202ENSMUST00000182143 629 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm27682-201ENSMUST00000183930 110 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Poc1a-205ENSMUST00000191434 1242 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm35549-203ENSMUST00000204619 644 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm807-202ENSMUST00000224929 408 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Tnfrsf12a-201ENSMUST00000024698 963 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Fn3k-201ENSMUST00000026175 1047 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Fgl1-201ENSMUST00000034003 1120 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Alkbh3-201ENSMUST00000040005 1228 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm9955-201ENSMUST00000067987 309 ntAPPRIS P1 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gm18626-201ENSMUST00000221512 1409 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Prdx2-201ENSMUST00000005292 1500 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 4933407I05Rik-204ENSMUST00000217562 1561 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 AC123857.2-201ENSMUST00000225756 1582 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Tspan32-201ENSMUST00000009396 1582 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Npy5r-203ENSMUST00000212563 1747 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Entpd4-201ENSMUST00000064831 1842 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Awat2-202ENSMUST00000147103 1984 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Rsrc2-202ENSMUST00000057795 2270 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Odf2l-204ENSMUST00000106192 2425 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Synj2-203ENSMUST00000115784 2634 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Fdft1-201ENSMUST00000054963 2860 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Cep112-213ENSMUST00000150863 3453 ntTSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Zmat1-201ENSMUST00000064659 3501 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 Sptbn5-204ENSMUST00000156159 3625 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Adra1a-202ENSMUST00000159068 4282 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
Hmgb3O54879 Gpm6b-209ENSMUST00000112235 4480 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
Hmgb3O54879 D430042O09Rik-203ENSMUST00000124223 5874 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Plec-209ENSMUST00000089610 14972 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gpr146-203ENSMUST00000100514 4264 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Spaar-201ENSMUST00000131248 4086 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Spata33-207ENSMUST00000212760 4074 ntBASIC9.43□□□□□ -0.9
Hmgb3O54879 Gfra2-201ENSMUST00000022699 3472 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Zswim9-201ENSMUST00000108532 3346 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Ugt1a7c-201ENSMUST00000058237 3231 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Mkks-202ENSMUST00000110089 3178 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Slc4a9-202ENSMUST00000115694 2861 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Colq-201ENSMUST00000112027 2837 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Htr1f-201ENSMUST00000063076 2509 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Exoc4-203ENSMUST00000115080 2369 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Akap2-205ENSMUST00000102903 6650 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Galntl6-202ENSMUST00000098757 2210 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Fbxo25-204ENSMUST00000209913 2035 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Cyp1a2-201ENSMUST00000034860 1940 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Tmem138-201ENSMUST00000025568 1590 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Il17ra-201ENSMUST00000002976 7752 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Ceacam12-203ENSMUST00000108487 1495 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Tmub1-203ENSMUST00000115036 1455 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Col12a1-202ENSMUST00000121227 9953 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Lrrfip2-214ENSMUST00000217117 1363 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm43579-201ENSMUST00000202387 1307 ntBASIC9.43□□□□□ -0.9
Hmgb3O54879 Wbp1l-202ENSMUST00000111855 3865 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Lcn5-202ENSMUST00000100312 660 ntAPPRIS ALT2 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Tnfrsf18-202ENSMUST00000103173 1189 ntAPPRIS P4 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Trav13d-4-201ENSMUST00000103607 264 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Car15-201ENSMUST00000118960 1283 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm12138-201ENSMUST00000122180 951 ntBASIC9.43□□□□□ -0.9
Hmgb3O54879 Mpc1-202ENSMUST00000124023 555 ntTSL 2 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm11592-201ENSMUST00000133160 637 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Rdh18-ps-202ENSMUST00000143917 953 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
Hmgb3O54879 Atp6v1f-203ENSMUST00000149646 806 ntTSL 5 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm11379-201ENSMUST00000154678 381 ntTSL 3 BASIC9.43□□□□□ -0.9
Hmgb3O54879 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC9.43□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 169.7 ms