Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Cfb-202ENSMUST00000128767 2751 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ube3bQ9ES34 Mtmr4-201ENSMUST00000092802 5525 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
Ube3bQ9ES34 Eif5-212ENSMUST00000222375 3547 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
Ube3bQ9ES34 Tbata-201ENSMUST00000035894 1506 ntAPPRIS P3 TSL 5 BASIC13.69□□□□□ -0.22
Ube3bQ9ES34 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Reln-201ENSMUST00000062372 10885 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Ttc27-201ENSMUST00000024882 2820 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Duxf3-201ENSMUST00000174056 1486 ntTSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Prx-204ENSMUST00000125990 4298 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Calu-206ENSMUST00000172974 3063 ntTSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Ciz1-202ENSMUST00000113331 2604 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gmeb1-201ENSMUST00000030733 2485 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Rab11fip1-203ENSMUST00000209377 3769 ntTSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Pcdhb16-201ENSMUST00000051442 5225 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Rgma-202ENSMUST00000119206 3481 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Mtus2-203ENSMUST00000085558 7543 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Galnt10-201ENSMUST00000066987 4715 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Ighv1-58-201ENSMUST00000103529 351 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Snx29-202ENSMUST00000115814 1125 ntTSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm15617-201ENSMUST00000118973 771 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 n-R5s84-201ENSMUST00000122591 109 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 2810433D01Rik-202ENSMUST00000154798 1045 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm24398-201ENSMUST00000157870 109 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Speer4f2-201ENSMUST00000166086 1278 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm9358-201ENSMUST00000183067 927 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm37002-201ENSMUST00000194560 373 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm43163-201ENSMUST00000196571 442 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm45079-201ENSMUST00000205627 461 ntTSL 3 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Hcst-203ENSMUST00000208740 366 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Acy1-209ENSMUST00000215395 1051 ntTSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Fam228a-203ENSMUST00000220978 861 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 AC125539.1-201ENSMUST00000227423 622 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm23680-201ENSMUST00000083162 164 ntBASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Akt2-201ENSMUST00000051356 2923 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Wdr45-203ENSMUST00000115688 1510 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Kcnt1-212ENSMUST00000197917 3711 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Slc37a2-201ENSMUST00000115068 5943 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Slc35a4-201ENSMUST00000036158 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Xpc-201ENSMUST00000032182 3634 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Ube3bQ9ES34 Gm15622-201ENSMUST00000143025 1464 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Anxa9-202ENSMUST00000107183 1872 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Slc6a12-205ENSMUST00000166457 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 E2f8-202ENSMUST00000119223 3499 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm36975-201ENSMUST00000194105 1828 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Lgsn-201ENSMUST00000062560 1937 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Ccdc88c-201ENSMUST00000068411 7542 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Cav2-202ENSMUST00000115459 974 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm13010-201ENSMUST00000140495 828 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm14275-201ENSMUST00000152112 430 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 B230119M05Rik-201ENSMUST00000154072 979 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Mir7032-201ENSMUST00000185154 79 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm8197-202ENSMUST00000193422 934 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm37800-202ENSMUST00000193667 553 ntTSL 3 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm38139-201ENSMUST00000195806 704 ntTSL 2 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm43066-201ENSMUST00000199589 1260 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Cnot2-201ENSMUST00000020374 1059 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm36355-201ENSMUST00000203752 639 ntTSL 3 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Timm10b-210ENSMUST00000209588 373 ntTSL 3 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm45359-201ENSMUST00000210635 427 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm31166-202ENSMUST00000210638 1268 ntTSL 3 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm6145-204ENSMUST00000210902 1266 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm7745-202ENSMUST00000222914 567 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 AC122346.3-201ENSMUST00000223983 306 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 CT025553.1-201ENSMUST00000226292 299 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm8420-201ENSMUST00000097103 598 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Col6a3-208ENSMUST00000188587 8285 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Csrnp1-201ENSMUST00000035101 2906 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm18806-201ENSMUST00000207607 1775 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Bbs5-202ENSMUST00000112286 1397 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Fam47e-203ENSMUST00000146417 1357 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Nudt18-202ENSMUST00000228554 3619 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm42943-201ENSMUST00000199676 3242 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Dnmt3a-201ENSMUST00000020991 9685 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Cog4-201ENSMUST00000034203 2737 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm9544-201ENSMUST00000223349 2482 ntBASIC13.67□□□□□ -0.22
Ube3bQ9ES34 E430018J23Rik-203ENSMUST00000165495 3324 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Ephb2-203ENSMUST00000105846 3653 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Snx29-203ENSMUST00000122168 2096 ntTSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 AI661453-202ENSMUST00000150819 4866 ntAPPRIS P2 TSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Spock1-202ENSMUST00000185502 4614 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Lmnb2-201ENSMUST00000057623 3531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Ube3bQ9ES34 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3bQ9ES34 Btrc-209ENSMUST00000224478 2194 ntBASIC13.66□□□□□ -0.22
Ube3bQ9ES34 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3bQ9ES34 Gm8899-201ENSMUST00000214635 1332 ntBASIC13.66□□□□□ -0.22
Ube3bQ9ES34 Foxj3-202ENSMUST00000106310 4660 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3bQ9ES34 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Ube3bQ9ES34 Fam189b-201ENSMUST00000041913 3083 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 70.2 ms