Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Tshz3-201ENSMUST00000021641 5098 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tmem140-201ENSMUST00000074949 2614 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tfr2-201ENSMUST00000031729 2926 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Lpar1-203ENSMUST00000107571 3543 ntAPPRIS P3 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Anp32e-204ENSMUST00000168106 2890 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Rpl11-201ENSMUST00000102536 833 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tnnt3-206ENSMUST00000105944 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tnnt3-210ENSMUST00000105948 753 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tnnt3-212ENSMUST00000105950 1037 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm15515-201ENSMUST00000117827 822 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Platr29-201ENSMUST00000130022 830 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Spata3-211ENSMUST00000159876 760 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tnnt3-224ENSMUST00000169299 1013 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 4930562C15Rik-202ENSMUST00000171105 1299 ntTSL 2 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Tnnt3-226ENSMUST00000180152 1067 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Kdm4dl-201ENSMUST00000184843 1187 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm19744-202ENSMUST00000186135 948 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm44136-201ENSMUST00000203819 1106 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 0610033M10Rik-201ENSMUST00000204546 506 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm45575-201ENSMUST00000210283 548 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm7848-201ENSMUST00000210739 718 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Cmtm2a-203ENSMUST00000212492 635 ntAPPRIS ALT2 TSL 3 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 AC155637.1-201ENSMUST00000218560 636 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 3300002I08Rik-201ENSMUST00000051153 650 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 AC122291.1-201ENSMUST00000228937 5748 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Ablim1-213ENSMUST00000111559 3184 ntAPPRIS ALT2 TSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Nphs1-201ENSMUST00000006825 4608 ntAPPRIS P2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Nfatc2-209ENSMUST00000171689 2742 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Rspo2-201ENSMUST00000063492 3338 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Ap1b1-203ENSMUST00000109897 3942 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Inpp4a-211ENSMUST00000168546 2964 ntTSL 5 BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Trpm1-221ENSMUST00000206706 2350 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 AC154404.1-201ENSMUST00000223601 2077 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Srrm2-201ENSMUST00000088621 8564 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm2822-201ENSMUST00000164299 2910 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Sdc1-201ENSMUST00000020911 3157 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Rab14-202ENSMUST00000113025 4346 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Arntl2-203ENSMUST00000111638 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Arntl2-201ENSMUST00000080530 1740 ntAPPRIS P3 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Gm37969-201ENSMUST00000195777 3409 ntBASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Clvs2-204ENSMUST00000161692 4283 ntTSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 Nnt-201ENSMUST00000069902 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.2□□□□□ -0.46
Syne3Q4FZC9 H2-Q1-202ENSMUST00000105041 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm45449-201ENSMUST00000211485 1960 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm18986-201ENSMUST00000216029 1986 ntBASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Son-203ENSMUST00000117633 8731 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Phka2-203ENSMUST00000112377 3947 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Madd-208ENSMUST00000111370 5879 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Madd-214ENSMUST00000111381 5873 ntAPPRIS ALT2 TSL 2 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Ift22-205ENSMUST00000200157 3071 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Adarb1-204ENSMUST00000105406 6662 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Plg-201ENSMUST00000014578 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Dmp1-201ENSMUST00000066708 2764 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Pak6-201ENSMUST00000099557 4411 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm6580-201ENSMUST00000117504 1357 ntBASIC12.19□□□□□ -0.46
Syne3Q4FZC9 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gabra1-201ENSMUST00000020707 4688 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Vps9d1-202ENSMUST00000118279 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Zswim9-203ENSMUST00000119558 3111 ntAPPRIS ALT2 TSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Ptgr2-207ENSMUST00000146377 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 4933431E20Rik-201ENSMUST00000131345 5407 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Fam163a-201ENSMUST00000015628 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Rsl1-201ENSMUST00000021997 2591 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Pcdh10-202ENSMUST00000170695 8234 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Enox1-203ENSMUST00000227662 3064 ntAPPRIS ALT2 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gpr158-201ENSMUST00000055946 7171 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm11960-201ENSMUST00000122068 925 ntBASIC12.19□□□□□ -0.46
Syne3Q4FZC9 5730437C11Rik-201ENSMUST00000155540 242 ntTSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm38304-201ENSMUST00000161826 600 ntTSL 3 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Ctdspl-202ENSMUST00000172464 798 ntAPPRIS ALT1 TSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm43068-201ENSMUST00000201095 1273 ntBASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Isg20-206ENSMUST00000205981 834 ntTSL 3 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm9445-201ENSMUST00000207454 1285 ntBASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Gm44968-201ENSMUST00000207652 1171 ntTSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 AC099934.4-201ENSMUST00000220745 523 ntTSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Mfrp-201ENSMUST00000034654 4316 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Ccnk-202ENSMUST00000221167 2789 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Zfp189-202ENSMUST00000107696 2965 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Akap5-203ENSMUST00000172992 2711 ntAPPRIS ALT2 TSL 3 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Wdr13-201ENSMUST00000033506 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Eng-201ENSMUST00000009705 3422 ntAPPRIS P3 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Astn1-209ENSMUST00000194369 3344 ntTSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Tmem47-201ENSMUST00000026760 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Taf6-202ENSMUST00000110936 2308 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.46
Syne3Q4FZC9 Rbm47-202ENSMUST00000094757 4643 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Gid8-202ENSMUST00000078687 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Nefm-202ENSMUST00000111089 3680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Gatb-202ENSMUST00000107672 1820 ntTSL 1 (best) BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Raph1-204ENSMUST00000140485 10024 ntAPPRIS P2 TSL 5 BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Ap2b1-206ENSMUST00000176523 2742 ntTSL 5 BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Tmprss6-201ENSMUST00000017086 3191 ntAPPRIS P1 TSL 1 (best) BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Fubp1-209ENSMUST00000198227 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.18□□□□□ -0.46
Syne3Q4FZC9 Ccpg1-201ENSMUST00000037977 3151 ntAPPRIS P3 TSL 1 (best) BASIC12.18□□□□□ -0.46
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms