Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Polrmt-201ENSMUST00000020580 3755 ntAPPRIS P2 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 P4ha1-203ENSMUST00000105466 2918 ntAPPRIS ALT1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Orc2-201ENSMUST00000027198 3561 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Plce1-204ENSMUST00000182481 8357 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Scd2-201ENSMUST00000026221 5453 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Adcyap1r1-201ENSMUST00000070736 3695 ntAPPRIS P4 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Ncoa7-201ENSMUST00000068567 5105 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Rnf224-201ENSMUST00000091318 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Cacna1g-204ENSMUST00000107785 7523 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Srrt-209ENSMUST00000197466 2972 ntAPPRIS ALT2 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Dip2a-201ENSMUST00000036033 6322 ntAPPRIS P2 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Ralbp1-202ENSMUST00000166543 4089 ntAPPRIS P1 TSL 1 (best) BASIC11.91□□□□□ -0.5
Sox9Q04887 Osbp2-201ENSMUST00000070552 4097 ntAPPRIS P3 TSL 5 BASIC11.91□□□□□ -0.5
Sox9Q04887 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Comt-204ENSMUST00000165430 1978 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 Gm45011-201ENSMUST00000207620 2297 ntBASIC11.9□□□□□ -0.5
Sox9Q04887 Myo9b-202ENSMUST00000168839 7102 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 Ccdc81-201ENSMUST00000041195 2439 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Zfp108-203ENSMUST00000206777 2562 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Gm20773-202ENSMUST00000193306 1341 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Dnajc12-201ENSMUST00000043317 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Sox9Q04887 Mgat1-203ENSMUST00000109194 2480 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Gm15519-201ENSMUST00000120088 1566 ntBASIC11.9□□□□□ -0.5
Sox9Q04887 Gm16048-201ENSMUST00000134250 663 ntTSL 3 BASIC11.9□□□□□ -0.5
Sox9Q04887 Prodh-205ENSMUST00000136776 2041 ntAPPRIS ALT2 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 Mpv17l-204ENSMUST00000141971 2155 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Gm23694-201ENSMUST00000179335 110 ntBASIC11.9□□□□□ -0.5
Sox9Q04887 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.5
Sox9Q04887 1700109G14Rik-202ENSMUST00000188538 754 ntTSL 3 BASIC11.9□□□□□ -0.5
Sox9Q04887 Gm5982-201ENSMUST00000196234 512 ntBASIC11.9□□□□□ -0.5
Sox9Q04887 Gm42751-201ENSMUST00000198065 559 ntBASIC11.9□□□□□ -0.5
Sox9Q04887 Mllt11-204ENSMUST00000198948 793 ntAPPRIS P1 TSL 3 BASIC11.9□□□□□ -0.5
Sox9Q04887 Gm9736-201ENSMUST00000219969 834 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Sox9Q04887 2010109A12Rik-201ENSMUST00000031330 549 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Gzmk-201ENSMUST00000038212 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Taar7a-201ENSMUST00000078532 1077 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Sox9Q04887 Taar7b-201ENSMUST00000092658 1077 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
Sox9Q04887 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Cacna1g-202ENSMUST00000100561 8125 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Bckdk-201ENSMUST00000071056 3405 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 4921507G05Rik-201ENSMUST00000181348 1653 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Map1b-203ENSMUST00000223725 2669 ntBASIC11.9□□□□□ -0.5
Sox9Q04887 Gjd4-201ENSMUST00000041007 2661 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.5
Sox9Q04887 Fam234b-202ENSMUST00000111916 2927 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Sox9Q04887 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Sox9Q04887 Zfp536-201ENSMUST00000056338 4621 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.51
Sox9Q04887 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC11.9□□□□□ -0.51
Sox9Q04887 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC11.9□□□□□ -0.51
Sox9Q04887 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Ap3m2-201ENSMUST00000163739 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Moxd2-201ENSMUST00000031937 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Srr-203ENSMUST00000108448 3239 ntAPPRIS P1 TSL 5 BASIC11.89□□□□□ -0.51
Sox9Q04887 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Rubcn-202ENSMUST00000089684 5311 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm28043-201ENSMUST00000130871 6521 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Sox9Q04887 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC11.89□□□□□ -0.51
Sox9Q04887 Ptgds-203ENSMUST00000114259 775 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Sox9Q04887 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC11.89□□□□□ -0.51
Sox9Q04887 Bola3-203ENSMUST00000122216 554 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm10631-201ENSMUST00000153288 494 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm24294-201ENSMUST00000158295 277 ntBASIC11.89□□□□□ -0.51
Sox9Q04887 1700021P04Rik-201ENSMUST00000178667 659 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm9192-201ENSMUST00000183221 985 ntBASIC11.89□□□□□ -0.51
Sox9Q04887 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm37257-201ENSMUST00000194871 717 ntTSL 5 BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm18010-201ENSMUST00000203553 202 ntBASIC11.89□□□□□ -0.51
Sox9Q04887 AC170597.1-201ENSMUST00000221956 440 ntTSL 2 BASIC11.89□□□□□ -0.51
Sox9Q04887 Rnf181-202ENSMUST00000069595 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Krtap4-1-201ENSMUST00000081007 1015 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
Sox9Q04887 Acyp1-201ENSMUST00000008966 648 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC11.89□□□□□ -0.51
Sox9Q04887 Gm10580-201ENSMUST00000097985 396 ntBASIC11.89□□□□□ -0.51
Sox9Q04887 Gm10582-201ENSMUST00000097987 396 ntBASIC11.89□□□□□ -0.51
Sox9Q04887 Gm10583-201ENSMUST00000097988 396 ntBASIC11.89□□□□□ -0.51
Sox9Q04887 Tmem208-202ENSMUST00000098453 950 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Plet1-201ENSMUST00000114474 1689 ntAPPRIS P2 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Ccdc162-208ENSMUST00000179614 2739 ntTSL 5 BASIC11.89□□□□□ -0.51
Sox9Q04887 Ccng2-202ENSMUST00000121127 2570 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
Sox9Q04887 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC11.89□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 59.3 ms