Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Parp14-201ENSMUST00000042665 7417 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Myo7a-204ENSMUST00000107128 7506 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
Rfx1P48377 Ddr1-212ENSMUST00000166980 3627 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Myo18a-222ENSMUST00000168348 6582 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
Rfx1P48377 Myh2-201ENSMUST00000018641 6018 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm15411-201ENSMUST00000133243 3488 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Col20a1-202ENSMUST00000149179 3867 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Rfx1P48377 Sh3tc2-201ENSMUST00000051720 4536 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
Rfx1P48377 Corin-207ENSMUST00000177290 2943 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
Rfx1P48377 Avpr2-202ENSMUST00000101470 2787 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Kalrn-207ENSMUST00000114960 6452 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Syn2-203ENSMUST00000203450 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Lrtm2-204ENSMUST00000168793 3407 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Rfx1P48377 Pik3cd-202ENSMUST00000105688 4335 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Wbp1l-204ENSMUST00000138302 3900 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Prrc2b-202ENSMUST00000069817 10671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm37954-201ENSMUST00000195400 2071 ntBASIC13.67□□□□□ -0.22
Rfx1P48377 Mpp4-203ENSMUST00000114275 2982 ntAPPRIS P4 TSL 2 BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm5833-202ENSMUST00000190707 1932 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Dnajb12-204ENSMUST00000146590 3070 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 D130019J16Rik-201ENSMUST00000193261 2158 ntBASIC13.67□□□□□ -0.22
Rfx1P48377 Rbm3-204ENSMUST00000115617 1152 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm14071-201ENSMUST00000117817 509 ntBASIC13.67□□□□□ -0.22
Rfx1P48377 Fuom-203ENSMUST00000121115 872 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm12199-201ENSMUST00000137567 517 ntTSL 3 BASIC13.67□□□□□ -0.22
Rfx1P48377 Oaz1-203ENSMUST00000179172 744 ntTSL 5 BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm26759-201ENSMUST00000181773 1251 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm37424-201ENSMUST00000191727 561 ntBASIC13.67□□□□□ -0.22
Rfx1P48377 Hax1-206ENSMUST00000197786 857 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm19187-201ENSMUST00000206781 892 ntBASIC13.67□□□□□ -0.22
Rfx1P48377 Gm31409-201ENSMUST00000209894 710 ntTSL 5 BASIC13.67□□□□□ -0.22
Rfx1P48377 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
Rfx1P48377 Mia-201ENSMUST00000071986 566 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC13.67□□□□□ -0.22
Rfx1P48377 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Rgs8-201ENSMUST00000041776 8474 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Cox15-201ENSMUST00000045562 4798 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Foxp1-201ENSMUST00000074346 2118 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Ank3-205ENSMUST00000092433 5072 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Eif3a-201ENSMUST00000025955 5176 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Apol9a-201ENSMUST00000081776 1475 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Gm11033-203ENSMUST00000156185 2321 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
Rfx1P48377 Ankrd55-202ENSMUST00000056047 1556 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Kbtbd12-206ENSMUST00000184878 3351 ntTSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Nr1i3-202ENSMUST00000075469 1305 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Dcaf8-201ENSMUST00000074144 4656 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Ccdc15-204ENSMUST00000216042 1669 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Tctn3-201ENSMUST00000025981 2743 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Olfr582-202ENSMUST00000210119 1787 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Slc25a44-203ENSMUST00000193433 3429 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Mdh1-201ENSMUST00000102874 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Capza1-201ENSMUST00000094028 3193 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 CT010462.1-202ENSMUST00000222225 2225 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Ckap2-201ENSMUST00000046916 2593 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Ccdc24-206ENSMUST00000164853 3990 ntTSL 2 BASIC13.66□□□□□ -0.22
Rfx1P48377 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 BC023719-201ENSMUST00000174728 978 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Gm8888-201ENSMUST00000177677 381 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Rfx1P48377 Gm5982-201ENSMUST00000196234 512 ntBASIC13.66□□□□□ -0.22
Rfx1P48377 Gm6450-201ENSMUST00000200896 574 ntBASIC13.66□□□□□ -0.22
Rfx1P48377 Gm43966-201ENSMUST00000203301 612 ntBASIC13.66□□□□□ -0.22
Rfx1P48377 Gm32633-201ENSMUST00000205726 587 ntTSL 3 BASIC13.66□□□□□ -0.22
Rfx1P48377 Gm18054-201ENSMUST00000207539 555 ntBASIC13.66□□□□□ -0.22
Rfx1P48377 AC134869.4-202ENSMUST00000224350 837 ntBASIC13.66□□□□□ -0.22
Rfx1P48377 CT025533.2-201ENSMUST00000228715 1248 ntBASIC13.66□□□□□ -0.22
Rfx1P48377 Polr2d-201ENSMUST00000025106 956 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Prr9-201ENSMUST00000070284 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Vmn1r222-201ENSMUST00000077116 1054 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Rfx1P48377 Rpl9-ps6-201ENSMUST00000078034 691 ntAPPRIS P1 BASIC13.66□□□□□ -0.22
Rfx1P48377 Nrip3-201ENSMUST00000033331 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Ablim2-204ENSMUST00000114204 2953 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Cct3-204ENSMUST00000164166 1804 ntTSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Slc10a3-203ENSMUST00000114146 1902 ntAPPRIS P2 TSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Slc12a8-203ENSMUST00000119173 2382 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Ift46-201ENSMUST00000002099 4169 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Cd6-203ENSMUST00000080292 3032 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Rfx1P48377 Pou2f1-206ENSMUST00000111429 2679 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Rfx1P48377 Dnm3-202ENSMUST00000086074 7523 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Gprc5d-202ENSMUST00000111922 1317 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Mum1l1-204ENSMUST00000113045 4523 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Rfx1P48377 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Pik3r5-201ENSMUST00000021283 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Arhgap25-201ENSMUST00000071024 2635 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Gsdmc2-202ENSMUST00000188404 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 AC154404.1-201ENSMUST00000223601 2077 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Tm9sf1-202ENSMUST00000120041 2164 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Gm44369-201ENSMUST00000204543 2175 ntBASIC13.65□□□□□ -0.22
Rfx1P48377 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Alox12-201ENSMUST00000000329 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Rfx1P48377 Platr25-207ENSMUST00000222477 1705 ntTSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 Ccdc191-201ENSMUST00000122014 1822 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
Rfx1P48377 AC154171.2-201ENSMUST00000225219 2652 ntBASIC13.65□□□□□ -0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33.6 ms