Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Rasgef1a-202ENSMUST00000203482 2227 ntAPPRIS P3 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Prdm9-205ENSMUST00000147532 1447 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Gm26632-201ENSMUST00000181120 1400 ntTSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Tcn2-203ENSMUST00000109989 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Ccdc170-201ENSMUST00000019901 2151 ntAPPRIS P2 TSL 5 BASIC10.92□□□□□ -0.66
Cdx2P43241 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC10.92□□□□□ -0.66
Cdx2P43241 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Zc3hc1-202ENSMUST00000102992 1865 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm7841-201ENSMUST00000122108 1629 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 Tmem39a-201ENSMUST00000002924 2871 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Sec14l2-201ENSMUST00000003681 2631 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 4931409K22Rik-201ENSMUST00000088302 2613 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Nbeal2-211ENSMUST00000196488 8599 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Car10-201ENSMUST00000042943 3293 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 4931406C07Rik-203ENSMUST00000180339 2756 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Psmd12-202ENSMUST00000106750 1311 ntTSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Cdh22-201ENSMUST00000065438 3702 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Plekhg2-203ENSMUST00000121085 4649 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Cdx2P43241 Tmprss3-201ENSMUST00000024833 2731 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Qpctl-201ENSMUST00000032566 2710 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC10.91□□□□□ -0.66
Cdx2P43241 Mtmr12-202ENSMUST00000071993 3351 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm18986-201ENSMUST00000216029 1986 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 Rpl7a-201ENSMUST00000102898 914 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 1700001C02Rik-202ENSMUST00000114743 729 ntTSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm14165-201ENSMUST00000121456 952 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 Aamdc-207ENSMUST00000138060 467 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm14718-201ENSMUST00000138082 752 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm14198-201ENSMUST00000153208 948 ntTSL 2 BASIC10.91□□□□□ -0.66
Cdx2P43241 Ccndbp1-208ENSMUST00000171260 1187 ntAPPRIS ALT2 TSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Higd1c-202ENSMUST00000177211 555 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm5294-201ENSMUST00000179205 651 ntAPPRIS P1 TSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm9162-201ENSMUST00000182081 991 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 4930477O15Rik-201ENSMUST00000196484 1089 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 Gm42660-201ENSMUST00000197733 947 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 9530034A14Rik-201ENSMUST00000197919 1083 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm43458-201ENSMUST00000200791 462 ntTSL 3 BASIC10.91□□□□□ -0.66
Cdx2P43241 3110009M11Rik-201ENSMUST00000208647 892 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 AC153891.1-201ENSMUST00000213761 742 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 E230014E18Rik-201ENSMUST00000215920 859 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm9487-201ENSMUST00000216600 472 ntBASIC10.91□□□□□ -0.66
Cdx2P43241 D730050B12Rik-201ENSMUST00000223149 585 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Pla2g1b-201ENSMUST00000031495 557 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gnai3-201ENSMUST00000000001 3262 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Kmt5b-207ENSMUST00000113974 4150 ntAPPRIS P3 TSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Rph3a-201ENSMUST00000079204 4150 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm2464-201ENSMUST00000180838 2551 ntTSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Zc3h12d-201ENSMUST00000039484 4092 ntAPPRIS P1 TSL 1 (best) BASIC10.91□□□□□ -0.66
Cdx2P43241 Rgs11-201ENSMUST00000025020 2006 ntAPPRIS P2 TSL 2 BASIC10.91□□□□□ -0.66
Cdx2P43241 Abi1-208ENSMUST00000139038 2899 ntAPPRIS ALT1 TSL 5 BASIC10.91□□□□□ -0.66
Cdx2P43241 Gm13814-201ENSMUST00000141341 3077 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Klhdc10-206ENSMUST00000144272 1387 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm29684-201ENSMUST00000220248 1982 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Lck-201ENSMUST00000067240 2185 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Nrap-203ENSMUST00000095947 5214 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Xkr6-202ENSMUST00000120820 1702 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Otop1-202ENSMUST00000114099 3141 ntAPPRIS P5 TSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 BC048403-201ENSMUST00000065600 3123 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Rspo2-203ENSMUST00000226810 3091 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Katnal2-207ENSMUST00000137354 1482 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm11554-201ENSMUST00000105056 890 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm6158-201ENSMUST00000109467 904 ntBASIC10.9□□□□□ -0.66
Cdx2P43241 Surf6-202ENSMUST00000114043 894 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm11957-201ENSMUST00000118304 779 ntBASIC10.9□□□□□ -0.66
Cdx2P43241 Gm13008-201ENSMUST00000142289 507 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 H2al1i-201ENSMUST00000164729 318 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 H2-M2-202ENSMUST00000171139 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 H2al1h-201ENSMUST00000177926 318 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 H2al1d-201ENSMUST00000178595 318 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 H2al1c-201ENSMUST00000178806 318 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 H2al1f-201ENSMUST00000179004 318 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 1110036E04Rik-201ENSMUST00000181151 777 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Abhd14a-204ENSMUST00000185334 1109 ntAPPRIS P1 TSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm28345-201ENSMUST00000188769 1139 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm28970-201ENSMUST00000191098 1139 ntTSL 5 BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm30946-201ENSMUST00000198288 724 ntBASIC10.9□□□□□ -0.66
Cdx2P43241 Tcf25-210ENSMUST00000212880 827 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Gm36176-201ENSMUST00000218749 501 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 AC122035.1-201ENSMUST00000227576 1016 ntBASIC10.9□□□□□ -0.66
Cdx2P43241 Ctxn2-201ENSMUST00000099452 1028 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 3830406C13Rik-209ENSMUST00000224389 2444 ntAPPRIS P1 BASIC10.9□□□□□ -0.66
Cdx2P43241 Tfb2m-201ENSMUST00000027769 2449 ntAPPRIS P1 TSL 1 (best) BASIC10.9□□□□□ -0.66
Cdx2P43241 Stx3-203ENSMUST00000075304 2430 ntTSL 1 (best) BASIC10.9□□□□□ -0.66
Retrieved 100 of 76,532 protein–RNA pairs in 76.6 ms