Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Stat1-211ENSMUST00000189347 2588 ntAPPRIS ALT1 TSL 5 BASIC13.33□□□□□ -0.27
Traf1P39428 Tunar-201ENSMUST00000180458 3282 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Slc10a3-204ENSMUST00000114147 1708 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Traf1P39428 Gm10604-201ENSMUST00000098260 1706 ntAPPRIS P1 BASIC13.33□□□□□ -0.27
Traf1P39428 Dlk1-201ENSMUST00000056110 4653 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Dnmt1-201ENSMUST00000004202 5367 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Rbm10-207ENSMUST00000177738 2790 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.27
Traf1P39428 Rbm10-201ENSMUST00000064911 2793 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
Traf1P39428 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Psmc2-201ENSMUST00000030769 1785 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Gm26013-201ENSMUST00000104404 119 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Gm11500-201ENSMUST00000118237 601 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Gm15856-201ENSMUST00000124853 1162 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Gm18159-201ENSMUST00000174516 1070 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Ly6c1-202ENSMUST00000179762 838 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Csmd2os-202ENSMUST00000179945 643 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 9930004E17Rik-201ENSMUST00000180031 498 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Gm29040-201ENSMUST00000189899 1188 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Gm38314-201ENSMUST00000195709 625 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Gm43830-201ENSMUST00000198760 1067 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Olfr567-ps1-201ENSMUST00000210349 857 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Folr2-203ENSMUST00000210598 1204 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Pgpep1l-201ENSMUST00000032770 953 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Cysrt1-201ENSMUST00000043379 873 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Mrps34-201ENSMUST00000043907 918 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Lce1e-201ENSMUST00000090867 711 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Zfp639-201ENSMUST00000029203 1458 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Mmd2-201ENSMUST00000037048 3317 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Arhgef9-206ENSMUST00000113884 3784 ntTSL 5 BASIC13.33□□□□□ -0.28
Traf1P39428 Med12l-201ENSMUST00000029393 2295 ntTSL 5 BASIC13.33□□□□□ -0.28
Traf1P39428 Dmbt1-202ENSMUST00000208311 6272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Tcof1-202ENSMUST00000175934 4595 ntAPPRIS ALT2 TSL 2 BASIC13.33□□□□□ -0.28
Traf1P39428 Gm38089-201ENSMUST00000193585 1514 ntBASIC13.33□□□□□ -0.28
Traf1P39428 Lingo4-201ENSMUST00000050975 3645 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Dcaf11-202ENSMUST00000117236 2538 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Traf1P39428 H2-M2-201ENSMUST00000016427 1550 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Abcg2-202ENSMUST00000114294 2178 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 AC093022.4-203ENSMUST00000228523 2657 ntBASIC13.32□□□□□ -0.28
Traf1P39428 Siglec1-202ENSMUST00000110226 1861 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Rtp4-202ENSMUST00000209422 1859 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 Hnrnpa2b1-202ENSMUST00000090002 1662 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 Drd1-202ENSMUST00000221470 3576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Mbnl2-208ENSMUST00000227594 2334 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Traf1P39428 2810408I11Rik-201ENSMUST00000122813 435 ntTSL 2 BASIC13.32□□□□□ -0.28
Traf1P39428 Plgrkt-209ENSMUST00000152936 604 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 H1foo-203ENSMUST00000161969 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Mocs2-203ENSMUST00000164737 745 ntTSL 3 BASIC13.32□□□□□ -0.28
Traf1P39428 Tmem242-203ENSMUST00000188282 822 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Gm34023-201ENSMUST00000195539 217 ntBASIC13.32□□□□□ -0.28
Traf1P39428 Sox2ot-217ENSMUST00000200414 710 ntTSL 3 BASIC13.32□□□□□ -0.28
Traf1P39428 Cabcoco1-201ENSMUST00000020103 1262 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 AC155712.2-201ENSMUST00000220398 643 ntTSL 3 BASIC13.32□□□□□ -0.28
Traf1P39428 AC134328.1-201ENSMUST00000222693 667 ntTSL 2 BASIC13.32□□□□□ -0.28
Traf1P39428 Taar9-201ENSMUST00000041180 1047 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Traf1P39428 A630075F10Rik-201ENSMUST00000180895 1913 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Abcd3-201ENSMUST00000029770 3489 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Uba6-202ENSMUST00000113373 3504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Gstcd-201ENSMUST00000029651 3503 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Btnl4-201ENSMUST00000065841 1761 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 Fnip1-201ENSMUST00000046835 6255 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Anxa7-202ENSMUST00000100844 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Stox2-209ENSMUST00000211882 9696 ntTSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
Traf1P39428 Gm8146-201ENSMUST00000192106 1847 ntBASIC13.32□□□□□ -0.28
Traf1P39428 Tcf4-251ENSMUST00000202474 1810 ntTSL 5 BASIC13.32□□□□□ -0.28
Traf1P39428 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Ablim1-211ENSMUST00000111555 2562 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Traf1P39428 Gm26714-201ENSMUST00000181338 1655 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Myo18a-210ENSMUST00000130305 5450 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Traf1P39428 Wif1-201ENSMUST00000020439 2294 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Gm43622-201ENSMUST00000200140 2019 ntBASIC13.31□□□□□ -0.28
Traf1P39428 1700010I14Rik-201ENSMUST00000024650 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Gm16219-201ENSMUST00000120096 274 ntBASIC13.31□□□□□ -0.28
Traf1P39428 Gm12446-201ENSMUST00000123933 798 ntTSL 3 BASIC13.31□□□□□ -0.28
Traf1P39428 Apoe-210ENSMUST00000174710 514 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Gm23153-201ENSMUST00000175323 313 ntBASIC13.31□□□□□ -0.28
Traf1P39428 Gm28727-201ENSMUST00000176549 443 ntTSL 3 BASIC13.31□□□□□ -0.28
Traf1P39428 Psmb6-201ENSMUST00000018430 798 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Gm17590-202ENSMUST00000197881 1232 ntTSL 2 BASIC13.31□□□□□ -0.28
Traf1P39428 CT030170.2-201ENSMUST00000223267 126 ntBASIC13.31□□□□□ -0.28
Traf1P39428 CT025553.1-201ENSMUST00000226292 299 ntBASIC13.31□□□□□ -0.28
Traf1P39428 Atp5h-201ENSMUST00000043931 625 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Ttbk2-202ENSMUST00000057135 11066 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Hgs-203ENSMUST00000106205 2898 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
Traf1P39428 Acad8-201ENSMUST00000060513 2859 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Trpv4-201ENSMUST00000071968 3228 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Tpcn2-201ENSMUST00000058022 2993 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 H2afv-202ENSMUST00000109737 1633 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Adgrl3-214ENSMUST00000120445 5230 ntTSL 5 BASIC13.31□□□□□ -0.28
Traf1P39428 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Traf1P39428 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
Retrieved 100 of 76,532 protein–RNA pairs in 11 ms