Protein–RNA interactions for Protein: P28481

Col2a1, Collagen alpha-1(II) chain, mousemouse

Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col2a1P28481 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col2a1P28481 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col2a1P28481 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC12.88□□□□□ -0.35
Col2a1P28481 E030013I19Rik-201ENSMUST00000148089 2754 ntTSL 1 (best) BASIC12.88□□□□□ -0.35
Col2a1P28481 AC090962.2-201ENSMUST00000225064 1801 ntBASIC12.88□□□□□ -0.35
Col2a1P28481 Gm11525-201ENSMUST00000134436 2804 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm37542-201ENSMUST00000192563 2832 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 Gm16010-202ENSMUST00000145410 4427 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 5730405O15Rik-201ENSMUST00000127521 1749 ntTSL 2 BASIC12.87□□□□□ -0.35
Col2a1P28481 Dpep2-201ENSMUST00000034373 1702 ntAPPRIS P4 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Macrod2-204ENSMUST00000110062 3554 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Cars-202ENSMUST00000105909 2462 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Zyg11b-201ENSMUST00000043616 8691 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Mest-210ENSMUST00000157040 2383 ntAPPRIS ALT1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Nid2-201ENSMUST00000022340 4876 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Tgif1-201ENSMUST00000059775 1631 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Wfdc8-202ENSMUST00000109338 1794 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Triml2-202ENSMUST00000209200 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm38042-201ENSMUST00000191614 5208 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 Nudt12os-201ENSMUST00000145848 939 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 C330021F23Rik-204ENSMUST00000151633 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm8451-201ENSMUST00000170338 447 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 Gm5302-201ENSMUST00000202130 796 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC12.87□□□□□ -0.35
Col2a1P28481 AC133499.1-201ENSMUST00000227778 1097 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col2a1P28481 Cxcl1-201ENSMUST00000031327 953 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm9758-201ENSMUST00000035980 1167 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Sept4-202ENSMUST00000063156 1245 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm7536-201ENSMUST00000077389 444 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 Olfr700-201ENSMUST00000079936 951 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm5453-201ENSMUST00000080866 447 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 C330021F23Rik-201ENSMUST00000086479 1111 ntAPPRIS P2 TSL 5 BASIC12.87□□□□□ -0.35
Col2a1P28481 4930572O03Rik-201ENSMUST00000092696 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gm6831-202ENSMUST00000213025 1673 ntBASIC12.87□□□□□ -0.35
Col2a1P28481 AC113282.5-201ENSMUST00000224330 1679 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col2a1P28481 Rtn4-202ENSMUST00000078830 3615 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Ufd1-202ENSMUST00000115578 2078 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col2a1P28481 Psd-210ENSMUST00000225323 3398 ntAPPRIS ALT2 BASIC12.87□□□□□ -0.35
Col2a1P28481 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Gng5-202ENSMUST00000118280 2419 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Tspear-201ENSMUST00000092366 2446 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col2a1P28481 Prr36-201ENSMUST00000168386 4616 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col2a1P28481 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC12.87□□□□□ -0.35
Col2a1P28481 Ackr2-202ENSMUST00000214340 3015 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Gm5766-201ENSMUST00000160520 1977 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm11380-201ENSMUST00000118067 560 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm12136-201ENSMUST00000120460 1209 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm11354-201ENSMUST00000121974 422 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Srrm3os-201ENSMUST00000131896 1271 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Gm12681-201ENSMUST00000132337 700 ntTSL 3 BASIC12.86□□□□□ -0.35
Col2a1P28481 Atad3aos-202ENSMUST00000150777 650 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Gm17221-201ENSMUST00000163909 481 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 6530401F13Rik-201ENSMUST00000166971 1090 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Gm17073-201ENSMUST00000168069 556 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm25951-201ENSMUST00000175330 64 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm40414-201ENSMUST00000197608 481 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm6352-201ENSMUST00000203583 1134 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 Gm33080-201ENSMUST00000205429 172 ntBASIC12.86□□□□□ -0.35
Col2a1P28481 AC116680.1-201ENSMUST00000222804 613 ntTSL 3 BASIC12.86□□□□□ -0.35
Col2a1P28481 Aven-202ENSMUST00000099588 791 ntAPPRIS ALT2 TSL 3 BASIC12.86□□□□□ -0.35
Col2a1P28481 Tubb1-201ENSMUST00000016399 1406 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Nr1i3-201ENSMUST00000005820 1414 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Dmrta1-201ENSMUST00000052478 4079 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Kif28-202ENSMUST00000211943 2643 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col2a1P28481 Msantd1-201ENSMUST00000050535 2793 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Map7-202ENSMUST00000116259 3831 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Golim4-202ENSMUST00000117242 4551 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
Col2a1P28481 Wars-204ENSMUST00000161154 1824 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Mavs-202ENSMUST00000110199 3057 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Wif1-203ENSMUST00000175867 2183 ntTSL 5 BASIC12.86□□□□□ -0.35
Col2a1P28481 Smug1-201ENSMUST00000064067 3281 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Col2a1P28481 Leprot-201ENSMUST00000030254 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col2a1P28481 Gm3409-202ENSMUST00000110599 1154 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Col2a1P28481 Rpl10-ps1-201ENSMUST00000119438 645 ntBASIC12.85□□□□□ -0.35
Col2a1P28481 Gsta3-202ENSMUST00000121676 894 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col2a1P28481 Polr3c-205ENSMUST00000141377 808 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col2a1P28481 Gm3415-202ENSMUST00000179214 1154 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Col2a1P28481 Nmbr-206ENSMUST00000190114 662 ntTSL 3 BASIC12.85□□□□□ -0.35
Col2a1P28481 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC12.85□□□□□ -0.35
Col2a1P28481 Gm3409-203ENSMUST00000199142 1167 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col2a1P28481 Gm3402-203ENSMUST00000200228 1154 ntAPPRIS P2 TSL 5 BASIC12.85□□□□□ -0.35
Col2a1P28481 Gm8162-201ENSMUST00000213951 665 ntBASIC12.85□□□□□ -0.35
Col2a1P28481 Mrps11-201ENSMUST00000032840 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col2a1P28481 Eif3d-201ENSMUST00000100484 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col2a1P28481 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col2a1P28481 Uhrf1bp1l-201ENSMUST00000020112 6448 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col2a1P28481 Per1-206ENSMUST00000166748 4636 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col2a1P28481 Gm7405-201ENSMUST00000121476 1337 ntBASIC12.85□□□□□ -0.35
Col2a1P28481 Grip2-201ENSMUST00000159684 3006 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 86 ms