Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Eea1-201ENSMUST00000053484 7749 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Ubap2l-201ENSMUST00000029553 3509 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Mdm1-201ENSMUST00000020437 3074 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Trip12-207ENSMUST00000186648 6442 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.89
Hmgb3O54879 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Gm16478-201ENSMUST00000208113 5084 ntBASIC9.46□□□□□ -0.89
Hmgb3O54879 Tmem109-201ENSMUST00000038128 2188 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Rho-201ENSMUST00000032471 4621 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Cdc45-202ENSMUST00000096990 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.89
Hmgb3O54879 Nfx1-201ENSMUST00000030133 4349 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 E130114P18Rik-202ENSMUST00000107068 1132 ntAPPRIS P5 TSL 3 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Wisp1-202ENSMUST00000118823 708 ntTSL 5 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Vps29-204ENSMUST00000118830 1014 ntAPPRIS ALT1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm14247-201ENSMUST00000120950 237 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm10535-201ENSMUST00000182275 915 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm27839-201ENSMUST00000184242 106 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm27892-201ENSMUST00000185017 106 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 C330022C24Rik-201ENSMUST00000190581 1077 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm8515-201ENSMUST00000194852 576 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm6745-201ENSMUST00000199216 526 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Chfr-212ENSMUST00000200038 606 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Dera-204ENSMUST00000203216 688 ntTSL 5 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm44711-201ENSMUST00000205414 1264 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm17794-201ENSMUST00000220252 955 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Cartpt-201ENSMUST00000022150 827 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Cartpt-202ENSMUST00000224142 1238 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Atp6v0c-201ENSMUST00000024932 1183 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Bpifa1-201ENSMUST00000028985 1106 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Dmac1-201ENSMUST00000030103 741 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 2610528J11Rik-201ENSMUST00000030261 958 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Bace1-202ENSMUST00000078111 4041 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Olfr1495-202ENSMUST00000215930 2025 ntAPPRIS P1 TSL 5 BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm8706-201ENSMUST00000197372 1491 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Ppara-201ENSMUST00000057979 2063 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Gm43597-202ENSMUST00000201992 4620 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 AC153940.1-201ENSMUST00000220149 5300 ntBASIC9.46□□□□□ -0.9
Hmgb3O54879 Neu2-206ENSMUST00000166259 1596 ntAPPRIS P3 TSL 1 (best) BASIC9.46□□□□□ -0.9
Hmgb3O54879 Sp6-201ENSMUST00000047997 3546 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Cyp2d26-201ENSMUST00000006094 1645 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Ttc39b-203ENSMUST00000102823 8831 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Zfp93-201ENSMUST00000032696 2324 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 6030443J06Rik-201ENSMUST00000181209 2380 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Mlph-201ENSMUST00000027528 4499 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Bmp5-201ENSMUST00000012281 3822 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Cacna1c-204ENSMUST00000112793 6669 ntAPPRIS P4 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Arhgef16-207ENSMUST00000169623 2474 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Adk-201ENSMUST00000045376 1782 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Adgrl2-213ENSMUST00000199059 4637 ntTSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Suclg2-201ENSMUST00000079847 2518 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm12200-201ENSMUST00000144876 1858 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm8378-202ENSMUST00000167777 2624 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Eno1-201ENSMUST00000080149 1902 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Pla2g4b-201ENSMUST00000126150 2790 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 4930539E08Rik-201ENSMUST00000062357 4597 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Fcnb-202ENSMUST00000117486 873 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Psma1-203ENSMUST00000135570 960 ntTSL 3 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
Hmgb3O54879 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Asgr1-201ENSMUST00000018699 1259 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm37667-201ENSMUST00000193103 752 ntTSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm42442-201ENSMUST00000197951 1133 ntBASIC9.45□□□□□ -0.9
Hmgb3O54879 Tyms-ps-201ENSMUST00000219550 915 ntBASIC9.45□□□□□ -0.9
Hmgb3O54879 Tomm7-201ENSMUST00000030851 1125 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Slc10a6-201ENSMUST00000031263 2124 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Col9a1-201ENSMUST00000054588 3834 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Fkbp2-201ENSMUST00000070878 642 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm4559-201ENSMUST00000080669 600 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm6091-201ENSMUST00000098307 165 ntBASIC9.45□□□□□ -0.9
Hmgb3O54879 Cdh23-201ENSMUST00000073242 10688 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Stc2-201ENSMUST00000020546 3940 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Xiap-204ENSMUST00000115095 6670 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Tceanc-202ENSMUST00000112188 4050 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Ints2-201ENSMUST00000018212 5906 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Mybph-202ENSMUST00000191577 2320 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Magee2-201ENSMUST00000033575 2316 ntAPPRIS P1 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Pdzd2-201ENSMUST00000075317 10756 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Hepacam-201ENSMUST00000051839 3347 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Ctnnd1-219ENSMUST00000111693 6255 ntAPPRIS ALT1 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Atp1a3-205ENSMUST00000196684 3642 ntTSL 5 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Spem2-201ENSMUST00000056941 1640 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Cish-204ENSMUST00000168260 2742 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Ahnak2-201ENSMUST00000101010 2821 ntAPPRIS ALT2 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm38100-202ENSMUST00000201297 1789 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Fastkd5-201ENSMUST00000110262 3015 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
Hmgb3O54879 Muc3-201ENSMUST00000041226 1853 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
Hmgb3O54879 Gm37600-201ENSMUST00000193764 3292 ntBASIC9.44□□□□□ -0.9
Hmgb3O54879 Slc38a5-202ENSMUST00000115590 1983 ntAPPRIS ALT2 TSL 2 BASIC9.44□□□□□ -0.9
Retrieved 100 of 76,532 protein–RNA pairs in 175.1 ms